Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002840

Experiment: NFM with pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002835 and TX73_002840 are separated by 182 nucleotidesTX73_002840 and TX73_002845 overlap by 4 nucleotidesTX73_002845 and TX73_002850 overlap by 4 nucleotides TX73_002835: TX73_002835 - phospholipase, at 608,999 to 610,075 _002835 TX73_002840: TX73_002840 - AI-2E family transporter, at 610,258 to 611,418 _002840 TX73_002845: TX73_002845 - ChrR family anti-sigma-E factor, at 611,415 to 612,077 _002845 TX73_002850: TX73_002850 - sigma-70 family RNA polymerase sigma factor, at 612,074 to 612,661 _002850 Position (kb) 610 611 612Strain fitness (log2 ratio) -2 -1 0 1 2 3at 609.258 kb on - strand, within TX73_002835at 609.260 kb on + strand, within TX73_002835at 609.268 kb on - strand, within TX73_002835at 609.278 kb on + strand, within TX73_002835at 609.278 kb on + strand, within TX73_002835at 609.285 kb on + strand, within TX73_002835at 609.291 kb on - strand, within TX73_002835at 609.328 kb on + strand, within TX73_002835at 609.368 kb on - strand, within TX73_002835at 609.427 kb on - strand, within TX73_002835at 609.505 kb on + strand, within TX73_002835at 609.542 kb on + strand, within TX73_002835at 609.548 kb on + strand, within TX73_002835at 609.635 kb on + strand, within TX73_002835at 609.635 kb on + strand, within TX73_002835at 609.635 kb on + strand, within TX73_002835at 609.643 kb on - strand, within TX73_002835at 609.775 kb on - strand, within TX73_002835at 609.775 kb on - strand, within TX73_002835at 609.796 kb on - strand, within TX73_002835at 609.809 kb on + strand, within TX73_002835at 609.826 kb on + strand, within TX73_002835at 609.837 kb on + strand, within TX73_002835at 609.844 kb on - strand, within TX73_002835at 609.861 kb on + strand, within TX73_002835at 609.863 kb on + strand, within TX73_002835at 609.868 kb on - strand, within TX73_002835at 609.871 kb on - strand, within TX73_002835at 609.881 kb on - strand, within TX73_002835at 609.883 kb on - strand, within TX73_002835at 609.927 kb on - strand, within TX73_002835at 609.954 kb on + strand, within TX73_002835at 609.962 kb on - strand, within TX73_002835at 609.962 kb on - strand, within TX73_002835at 609.982 kb on + strandat 610.050 kb on - strandat 610.075 kb on + strandat 610.083 kb on - strandat 610.091 kb on - strandat 610.114 kb on + strandat 610.114 kb on - strandat 610.116 kb on + strandat 610.173 kb on + strandat 610.180 kb on - strandat 610.200 kb on - strandat 610.206 kb on - strandat 610.218 kb on - strandat 610.251 kb on - strandat 610.286 kb on - strandat 610.304 kb on + strandat 610.312 kb on - strandat 610.322 kb on - strandat 610.333 kb on + strandat 610.335 kb on + strandat 610.338 kb on + strandat 610.343 kb on + strandat 610.346 kb on - strandat 610.346 kb on - strandat 610.346 kb on - strandat 610.348 kb on + strandat 610.348 kb on + strandat 610.356 kb on - strandat 610.356 kb on - strandat 610.356 kb on - strandat 610.358 kb on - strandat 610.358 kb on - strandat 610.384 kb on + strand, within TX73_002840at 610.394 kb on - strand, within TX73_002840at 610.399 kb on - strand, within TX73_002840at 610.399 kb on - strand, within TX73_002840at 610.435 kb on + strand, within TX73_002840at 610.443 kb on - strand, within TX73_002840at 610.493 kb on + strand, within TX73_002840at 610.493 kb on + strand, within TX73_002840at 610.493 kb on + strand, within TX73_002840at 610.501 kb on - strand, within TX73_002840at 610.501 kb on - strand, within TX73_002840at 610.541 kb on - strand, within TX73_002840at 610.555 kb on - strand, within TX73_002840at 610.611 kb on + strand, within TX73_002840at 610.664 kb on - strand, within TX73_002840at 610.669 kb on + strand, within TX73_002840at 610.669 kb on - strand, within TX73_002840at 610.806 kb on + strand, within TX73_002840at 610.829 kb on + strand, within TX73_002840at 610.882 kb on + strand, within TX73_002840at 610.907 kb on + strand, within TX73_002840at 610.911 kb on + strand, within TX73_002840at 610.963 kb on + strand, within TX73_002840at 610.978 kb on + strand, within TX73_002840at 611.065 kb on - strand, within TX73_002840at 611.068 kb on + strand, within TX73_002840at 611.162 kb on - strand, within TX73_002840at 611.296 kb on + strand, within TX73_002840at 611.314 kb on - strandat 611.321 kb on + strandat 611.351 kb on - strandat 611.366 kb on - strandat 611.430 kb on + strandat 611.438 kb on - strandat 611.438 kb on - strandat 611.439 kb on + strandat 611.562 kb on - strand, within TX73_002845at 611.603 kb on + strand, within TX73_002845at 611.609 kb on + strand, within TX73_002845at 611.642 kb on - strand, within TX73_002845at 611.714 kb on + strand, within TX73_002845at 611.720 kb on - strand, within TX73_002845at 611.726 kb on + strand, within TX73_002845at 611.737 kb on + strand, within TX73_002845at 611.737 kb on + strand, within TX73_002845at 611.740 kb on - strand, within TX73_002845at 611.745 kb on - strand, within TX73_002845at 611.745 kb on - strand, within TX73_002845at 611.745 kb on - strand, within TX73_002845at 611.750 kb on - strand, within TX73_002845at 611.806 kb on + strand, within TX73_002845at 611.842 kb on + strand, within TX73_002845at 611.842 kb on + strand, within TX73_002845at 611.842 kb on + strand, within TX73_002845at 611.848 kb on + strand, within TX73_002845at 611.861 kb on - strand, within TX73_002845at 611.974 kb on - strand, within TX73_002845at 611.986 kb on - strand, within TX73_002845at 612.010 kb on - strand, within TX73_002845at 612.011 kb on - strandat 612.014 kb on + strandat 612.022 kb on - strandat 612.090 kb on - strandat 612.095 kb on + strandat 612.170 kb on + strand, within TX73_002850at 612.258 kb on - strand, within TX73_002850at 612.276 kb on + strand, within TX73_002850at 612.279 kb on - strand, within TX73_002850at 612.333 kb on + strand, within TX73_002850at 612.397 kb on + strand, within TX73_002850at 612.407 kb on + strand, within TX73_002850at 612.415 kb on - strand, within TX73_002850at 612.415 kb on - strand, within TX73_002850

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM with pyruvate
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609,258 - TX73_002835 0.24 -1.9
609,260 + TX73_002835 0.24 -0.5
609,268 - TX73_002835 0.25 +1.9
609,278 + TX73_002835 0.26 -2.7
609,278 + TX73_002835 0.26 +0.8
609,285 + TX73_002835 0.27 -1.1
609,291 - TX73_002835 0.27 -0.2
609,328 + TX73_002835 0.31 +0.7
609,368 - TX73_002835 0.34 -0.4
609,427 - TX73_002835 0.40 -1.8
609,505 + TX73_002835 0.47 -0.4
609,542 + TX73_002835 0.50 +2.1
609,548 + TX73_002835 0.51 +2.0
609,635 + TX73_002835 0.59 +1.0
609,635 + TX73_002835 0.59 +1.3
609,635 + TX73_002835 0.59 +0.6
609,643 - TX73_002835 0.60 +0.4
609,775 - TX73_002835 0.72 -1.2
609,775 - TX73_002835 0.72 +1.6
609,796 - TX73_002835 0.74 +0.5
609,809 + TX73_002835 0.75 +0.7
609,826 + TX73_002835 0.77 -0.9
609,837 + TX73_002835 0.78 -0.7
609,844 - TX73_002835 0.78 -2.2
609,861 + TX73_002835 0.80 +0.3
609,863 + TX73_002835 0.80 +0.1
609,868 - TX73_002835 0.81 -1.1
609,871 - TX73_002835 0.81 -2.6
609,881 - TX73_002835 0.82 -0.3
609,883 - TX73_002835 0.82 +1.5
609,927 - TX73_002835 0.86 +0.5
609,954 + TX73_002835 0.89 -1.6
609,962 - TX73_002835 0.89 -0.6
609,962 - TX73_002835 0.89 -0.8
609,982 + +1.1
610,050 - -1.3
610,075 + +0.0
610,083 - +0.4
610,091 - -0.6
610,114 + -0.9
610,114 - +1.4
610,116 + -1.9
610,173 + -0.0
610,180 - +0.9
610,200 - +1.3
610,206 - +0.2
610,218 - +0.3
610,251 - -0.3
610,286 - -0.6
610,304 + -1.3
610,312 - +1.6
610,322 - -0.8
610,333 + +0.4
610,335 + -0.5
610,338 + +1.0
610,343 + -1.0
610,346 - -0.9
610,346 - -0.2
610,346 - -1.6
610,348 + +0.7
610,348 + +1.5
610,356 - -2.0
610,356 - +0.4
610,356 - +1.6
610,358 - +1.5
610,358 - +2.7
610,384 + TX73_002840 0.11 -1.7
610,394 - TX73_002840 0.12 +0.3
610,399 - TX73_002840 0.12 -0.3
610,399 - TX73_002840 0.12 +0.2
610,435 + TX73_002840 0.15 +0.6
610,443 - TX73_002840 0.16 -1.5
610,493 + TX73_002840 0.20 -1.0
610,493 + TX73_002840 0.20 -0.2
610,493 + TX73_002840 0.20 -0.3
610,501 - TX73_002840 0.21 -0.7
610,501 - TX73_002840 0.21 -0.8
610,541 - TX73_002840 0.24 +0.5
610,555 - TX73_002840 0.26 -0.9
610,611 + TX73_002840 0.30 +1.0
610,664 - TX73_002840 0.35 -1.5
610,669 + TX73_002840 0.35 -0.7
610,669 - TX73_002840 0.35 -1.0
610,806 + TX73_002840 0.47 -0.3
610,829 + TX73_002840 0.49 -1.5
610,882 + TX73_002840 0.54 -2.0
610,907 + TX73_002840 0.56 -0.7
610,911 + TX73_002840 0.56 +0.3
610,963 + TX73_002840 0.61 +1.2
610,978 + TX73_002840 0.62 -1.4
611,065 - TX73_002840 0.70 +1.7
611,068 + TX73_002840 0.70 +1.0
611,162 - TX73_002840 0.78 -1.4
611,296 + TX73_002840 0.89 +0.5
611,314 - -0.9
611,321 + -1.8
611,351 - +2.1
611,366 - +0.5
611,430 + -0.9
611,438 - -1.9
611,438 - -1.9
611,439 + -0.4
611,562 - TX73_002845 0.22 -0.6
611,603 + TX73_002845 0.28 +1.9
611,609 + TX73_002845 0.29 -0.1
611,642 - TX73_002845 0.34 +1.1
611,714 + TX73_002845 0.45 -2.6
611,720 - TX73_002845 0.46 -2.1
611,726 + TX73_002845 0.47 -0.5
611,737 + TX73_002845 0.49 +0.6
611,737 + TX73_002845 0.49 +0.2
611,740 - TX73_002845 0.49 +0.2
611,745 - TX73_002845 0.50 -0.9
611,745 - TX73_002845 0.50 +3.6
611,745 - TX73_002845 0.50 -0.1
611,750 - TX73_002845 0.51 +3.2
611,806 + TX73_002845 0.59 -0.4
611,842 + TX73_002845 0.64 +1.3
611,842 + TX73_002845 0.64 +2.3
611,842 + TX73_002845 0.64 -1.9
611,848 + TX73_002845 0.65 -0.5
611,861 - TX73_002845 0.67 -0.7
611,974 - TX73_002845 0.84 -1.0
611,986 - TX73_002845 0.86 -0.9
612,010 - TX73_002845 0.90 +0.3
612,011 - -1.7
612,014 + +1.6
612,022 - -1.4
612,090 - +1.1
612,095 + -1.0
612,170 + TX73_002850 0.16 +1.7
612,258 - TX73_002850 0.31 +0.7
612,276 + TX73_002850 0.34 +1.8
612,279 - TX73_002850 0.35 -0.8
612,333 + TX73_002850 0.44 -1.4
612,397 + TX73_002850 0.55 +0.7
612,407 + TX73_002850 0.57 +1.8
612,415 - TX73_002850 0.58 +2.5
612,415 - TX73_002850 0.58 -1.3

Or see this region's nucleotide sequence