Experiment: NFM with pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002570 and TX73_002575 are separated by 24 nucleotides TX73_002575 and TX73_002580 overlap by 4 nucleotides TX73_002580 and TX73_002585 are separated by 4 nucleotides
TX73_002570: TX73_002570 - esterase-like activity of phytase family protein, at 550,067 to 551,215
_002570
TX73_002575: TX73_002575 - cobaltochelatase subunit CobT, at 551,240 to 553,144
_002575
TX73_002580: TX73_002580 - GNAT family N-acetyltransferase, at 553,141 to 553,551
_002580
TX73_002585: TX73_002585 - cobaltochelatase subunit CobS, at 553,556 to 554,551
_002585
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 550.265 kb on - strand, within TX73_002570 at 550.287 kb on - strand, within TX73_002570 at 550.296 kb on + strand, within TX73_002570 at 550.296 kb on + strand, within TX73_002570 at 550.325 kb on + strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.359 kb on - strand, within TX73_002570 at 550.383 kb on - strand, within TX73_002570 at 550.389 kb on + strand, within TX73_002570 at 550.458 kb on + strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.552 kb on + strand, within TX73_002570 at 550.552 kb on + strand, within TX73_002570 at 550.560 kb on - strand, within TX73_002570 at 550.576 kb on + strand, within TX73_002570 at 550.648 kb on - strand, within TX73_002570 at 550.690 kb on + strand, within TX73_002570 at 550.714 kb on + strand, within TX73_002570 at 550.737 kb on + strand, within TX73_002570 at 550.757 kb on + strand, within TX73_002570 at 550.780 kb on - strand, within TX73_002570 at 550.780 kb on - strand, within TX73_002570 at 550.780 kb on - strand, within TX73_002570 at 550.793 kb on + strand, within TX73_002570 at 550.798 kb on + strand, within TX73_002570 at 550.823 kb on + strand, within TX73_002570 at 550.892 kb on + strand, within TX73_002570 at 550.902 kb on + strand, within TX73_002570 at 550.940 kb on + strand, within TX73_002570 at 550.948 kb on + strand, within TX73_002570 at 550.953 kb on + strand, within TX73_002570 at 551.002 kb on + strand, within TX73_002570 at 551.002 kb on + strand, within TX73_002570 at 551.008 kb on + strand, within TX73_002570 at 551.023 kb on - strand, within TX73_002570 at 551.025 kb on + strand, within TX73_002570 at 551.033 kb on - strand, within TX73_002570 at 551.049 kb on - strand, within TX73_002570 at 551.068 kb on + strand, within TX73_002570 at 551.086 kb on + strand, within TX73_002570 at 551.201 kb on - strand at 551.213 kb on + strand at 551.236 kb on - strand at 551.236 kb on - strand at 551.295 kb on + strand at 553.112 kb on + strand at 553.157 kb on + strand at 553.181 kb on + strand at 553.189 kb on - strand, within TX73_002580 at 553.233 kb on - strand, within TX73_002580 at 553.299 kb on + strand, within TX73_002580 at 553.345 kb on - strand, within TX73_002580 at 553.369 kb on + strand, within TX73_002580 at 553.377 kb on + strand, within TX73_002580 at 553.406 kb on + strand, within TX73_002580 at 553.445 kb on + strand, within TX73_002580 at 553.491 kb on - strand, within TX73_002580 at 553.495 kb on + strand, within TX73_002580 at 553.503 kb on - strand, within TX73_002580 at 553.522 kb on - strand at 553.540 kb on + strand at 553.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NFM with pyruvate remove 550,265 - TX73_002570 0.17 +0.9 550,287 - TX73_002570 0.19 -2.1 550,296 + TX73_002570 0.20 +0.4 550,296 + TX73_002570 0.20 +1.4 550,325 + TX73_002570 0.22 +1.4 550,354 - TX73_002570 0.25 +0.5 550,354 - TX73_002570 0.25 +0.0 550,354 - TX73_002570 0.25 -1.2 550,354 - TX73_002570 0.25 +0.9 550,359 - TX73_002570 0.25 -0.2 550,383 - TX73_002570 0.28 -2.0 550,389 + TX73_002570 0.28 -0.0 550,458 + TX73_002570 0.34 -0.9 550,466 - TX73_002570 0.35 -1.4 550,466 - TX73_002570 0.35 -2.2 550,466 - TX73_002570 0.35 -0.0 550,466 - TX73_002570 0.35 +0.4 550,552 + TX73_002570 0.42 -1.0 550,552 + TX73_002570 0.42 +1.1 550,560 - TX73_002570 0.43 +1.0 550,576 + TX73_002570 0.44 +4.6 550,648 - TX73_002570 0.51 -0.5 550,690 + TX73_002570 0.54 +1.0 550,714 + TX73_002570 0.56 +0.5 550,737 + TX73_002570 0.58 +0.2 550,757 + TX73_002570 0.60 -0.4 550,780 - TX73_002570 0.62 +0.1 550,780 - TX73_002570 0.62 -1.7 550,780 - TX73_002570 0.62 -1.8 550,793 + TX73_002570 0.63 +1.2 550,798 + TX73_002570 0.64 -1.5 550,823 + TX73_002570 0.66 -2.3 550,892 + TX73_002570 0.72 -0.2 550,902 + TX73_002570 0.73 -0.9 550,940 + TX73_002570 0.76 +0.8 550,948 + TX73_002570 0.77 +0.9 550,953 + TX73_002570 0.77 -1.0 551,002 + TX73_002570 0.81 +1.1 551,002 + TX73_002570 0.81 +0.5 551,008 + TX73_002570 0.82 -1.2 551,023 - TX73_002570 0.83 -0.6 551,025 + TX73_002570 0.83 -0.3 551,033 - TX73_002570 0.84 -1.9 551,049 - TX73_002570 0.85 -1.2 551,068 + TX73_002570 0.87 -0.9 551,086 + TX73_002570 0.89 -1.0 551,201 - -0.1 551,213 + +0.5 551,236 - -0.3 551,236 - -1.6 551,295 + +0.7 553,112 + +1.5 553,157 + +1.4 553,181 + +0.2 553,189 - TX73_002580 0.12 -1.9 553,233 - TX73_002580 0.22 +1.5 553,299 + TX73_002580 0.38 -0.5 553,345 - TX73_002580 0.50 -2.3 553,369 + TX73_002580 0.55 +0.4 553,377 + TX73_002580 0.57 -1.8 553,406 + TX73_002580 0.64 +0.0 553,445 + TX73_002580 0.74 -0.8 553,491 - TX73_002580 0.85 +0.1 553,495 + TX73_002580 0.86 -1.4 553,503 - TX73_002580 0.88 -0.8 553,522 - +1.2 553,540 + +1.2 553,554 + -1.0
Or see this region's nucleotide sequence