Experiment: NFM with pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000230 and TX73_000235 are separated by 160 nucleotides TX73_000235 and TX73_000240 are separated by 168 nucleotides TX73_000240 and TX73_000245 are separated by 229 nucleotides TX73_000245 and TX73_000250 are separated by 8 nucleotides
TX73_000230: TX73_000230 - complex I NDUFA9 subunit family protein, at 51,116 to 52,081
_000230
TX73_000235: TX73_000235 - tRNA-Leu, at 52,242 to 52,326
_000235
TX73_000240: TX73_000240 - ribonuclease D, at 52,495 to 53,109
_000240
TX73_000245: TX73_000245 - LPS export ABC transporter periplasmic protein LptC, at 53,339 to 54,079
_000245
TX73_000250: TX73_000250 - LptA/OstA family protein, at 54,088 to 54,753
_000250
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 51.514 kb on - strand, within TX73_000230 at 51.515 kb on - strand, within TX73_000230 at 51.534 kb on + strand, within TX73_000230 at 51.548 kb on - strand, within TX73_000230 at 51.555 kb on + strand, within TX73_000230 at 51.555 kb on + strand, within TX73_000230 at 51.584 kb on - strand, within TX73_000230 at 51.584 kb on - strand, within TX73_000230 at 51.584 kb on - strand, within TX73_000230 at 51.590 kb on + strand, within TX73_000230 at 51.598 kb on + strand, within TX73_000230 at 51.598 kb on + strand, within TX73_000230 at 51.606 kb on - strand, within TX73_000230 at 51.621 kb on + strand, within TX73_000230 at 51.621 kb on + strand, within TX73_000230 at 51.629 kb on + strand, within TX73_000230 at 51.640 kb on - strand, within TX73_000230 at 51.646 kb on - strand, within TX73_000230 at 51.654 kb on + strand, within TX73_000230 at 51.655 kb on + strand, within TX73_000230 at 51.677 kb on + strand, within TX73_000230 at 51.683 kb on - strand, within TX73_000230 at 51.683 kb on - strand, within TX73_000230 at 51.683 kb on - strand, within TX73_000230 at 51.683 kb on - strand, within TX73_000230 at 51.693 kb on - strand, within TX73_000230 at 51.728 kb on + strand, within TX73_000230 at 51.728 kb on + strand, within TX73_000230 at 51.733 kb on + strand, within TX73_000230 at 51.736 kb on + strand, within TX73_000230 at 51.736 kb on + strand, within TX73_000230 at 51.736 kb on + strand, within TX73_000230 at 51.736 kb on + strand, within TX73_000230 at 51.736 kb on + strand, within TX73_000230 at 51.736 kb on - strand, within TX73_000230 at 51.741 kb on - strand, within TX73_000230 at 51.744 kb on - strand, within TX73_000230 at 51.744 kb on - strand, within TX73_000230 at 51.744 kb on - strand, within TX73_000230 at 51.751 kb on - strand, within TX73_000230 at 51.756 kb on - strand, within TX73_000230 at 51.757 kb on - strand, within TX73_000230 at 51.781 kb on + strand, within TX73_000230 at 51.783 kb on + strand, within TX73_000230 at 51.783 kb on + strand, within TX73_000230 at 51.783 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.788 kb on + strand, within TX73_000230 at 51.789 kb on - strand, within TX73_000230 at 51.791 kb on - strand, within TX73_000230 at 51.791 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.796 kb on - strand, within TX73_000230 at 51.798 kb on + strand, within TX73_000230 at 51.827 kb on - strand, within TX73_000230 at 51.835 kb on + strand, within TX73_000230 at 51.839 kb on - strand, within TX73_000230 at 51.853 kb on + strand, within TX73_000230 at 51.883 kb on + strand, within TX73_000230 at 51.891 kb on - strand, within TX73_000230 at 51.891 kb on - strand, within TX73_000230 at 51.893 kb on + strand, within TX73_000230 at 51.896 kb on - strand, within TX73_000230 at 51.902 kb on + strand, within TX73_000230 at 51.910 kb on - strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.912 kb on + strand, within TX73_000230 at 51.917 kb on + strand, within TX73_000230 at 51.917 kb on + strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.920 kb on - strand, within TX73_000230 at 51.922 kb on + strand, within TX73_000230 at 51.930 kb on + strand, within TX73_000230 at 51.958 kb on + strand, within TX73_000230 at 51.973 kb on + strand, within TX73_000230 at 52.032 kb on + strand at 52.033 kb on + strand at 52.034 kb on + strand at 52.041 kb on - strand at 52.043 kb on + strand at 52.043 kb on + strand at 52.051 kb on - strand at 52.077 kb on + strand at 52.079 kb on + strand at 52.079 kb on + strand at 52.079 kb on + strand at 52.079 kb on + strand at 52.085 kb on + strand at 52.085 kb on - strand at 52.085 kb on - strand at 52.093 kb on - strand at 52.093 kb on - strand at 52.097 kb on + strand at 52.105 kb on - strand at 52.110 kb on + strand at 52.111 kb on + strand at 52.111 kb on + strand at 52.128 kb on + strand at 52.158 kb on + strand at 52.167 kb on - strand at 52.170 kb on + strand at 52.176 kb on - strand at 52.178 kb on - strand at 52.200 kb on + strand at 52.240 kb on + strand at 52.319 kb on + strand at 52.324 kb on + strand at 52.332 kb on - strand at 52.337 kb on - strand at 52.338 kb on + strand at 52.364 kb on - strand at 52.389 kb on + strand at 52.389 kb on + strand at 52.421 kb on + strand at 52.421 kb on + strand at 52.421 kb on + strand at 52.421 kb on + strand at 52.429 kb on - strand at 52.429 kb on - strand at 52.433 kb on + strand at 52.441 kb on - strand at 52.441 kb on - strand at 52.464 kb on + strand at 52.464 kb on - strand at 52.466 kb on + strand at 52.468 kb on + strand at 52.474 kb on - strand at 52.476 kb on + strand at 52.476 kb on + strand at 52.476 kb on + strand at 52.476 kb on + strand at 52.476 kb on + strand at 52.476 kb on + strand at 52.476 kb on + strand at 52.483 kb on + strand at 52.484 kb on + strand at 52.484 kb on - strand at 52.484 kb on - strand at 52.484 kb on - strand at 52.484 kb on - strand at 52.484 kb on - strand at 52.484 kb on - strand at 52.484 kb on - strand at 53.111 kb on - strand at 53.113 kb on + strand at 53.113 kb on + strand at 53.121 kb on - strand at 53.121 kb on - strand at 53.141 kb on - strand at 53.146 kb on + strand at 53.186 kb on - strand at 53.192 kb on + strand at 53.208 kb on + strand at 53.208 kb on + strand at 53.213 kb on + strand at 53.216 kb on - strand at 53.237 kb on + strand at 53.237 kb on + strand at 53.245 kb on - strand at 53.245 kb on - strand at 53.247 kb on + strand at 53.247 kb on + strand at 53.257 kb on - strand at 53.265 kb on - strand at 53.283 kb on + strand at 53.293 kb on + strand at 53.295 kb on + strand at 53.295 kb on + strand at 53.295 kb on + strand at 53.295 kb on + strand at 53.302 kb on + strand at 53.302 kb on + strand at 53.303 kb on - strand at 53.304 kb on + strand at 53.310 kb on - strand at 53.322 kb on - strand at 53.323 kb on - strand at 53.331 kb on + strand at 53.334 kb on - strand at 53.353 kb on + strand at 53.355 kb on - strand at 53.363 kb on + strand at 53.376 kb on - strand at 53.386 kb on + strand at 54.000 kb on - strand, within TX73_000245 at 54.046 kb on + strand at 54.046 kb on + strand at 54.046 kb on + strand at 54.054 kb on - strand at 54.078 kb on + strand at 54.086 kb on - strand at 54.091 kb on + strand at 54.091 kb on - strand at 54.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NFM with pyruvate remove 51,514 - TX73_000230 0.41 +0.8 51,515 - TX73_000230 0.41 +0.5 51,534 + TX73_000230 0.43 -0.8 51,548 - TX73_000230 0.45 +0.3 51,555 + TX73_000230 0.45 +0.0 51,555 + TX73_000230 0.45 -1.0 51,584 - TX73_000230 0.48 +1.4 51,584 - TX73_000230 0.48 -1.5 51,584 - TX73_000230 0.48 +2.2 51,590 + TX73_000230 0.49 -0.2 51,598 + TX73_000230 0.50 +0.2 51,598 + TX73_000230 0.50 -1.3 51,606 - TX73_000230 0.51 +0.5 51,621 + TX73_000230 0.52 +1.8 51,621 + TX73_000230 0.52 +0.6 51,629 + TX73_000230 0.53 +0.3 51,640 - TX73_000230 0.54 -0.5 51,646 - TX73_000230 0.55 +1.2 51,654 + TX73_000230 0.56 +0.6 51,655 + TX73_000230 0.56 -0.8 51,677 + TX73_000230 0.58 +0.4 51,683 - TX73_000230 0.59 +2.1 51,683 - TX73_000230 0.59 -1.9 51,683 - TX73_000230 0.59 +1.4 51,683 - TX73_000230 0.59 -2.3 51,693 - TX73_000230 0.60 -1.6 51,728 + TX73_000230 0.63 +0.6 51,728 + TX73_000230 0.63 -2.3 51,733 + TX73_000230 0.64 -0.8 51,736 + TX73_000230 0.64 -1.1 51,736 + TX73_000230 0.64 +0.6 51,736 + TX73_000230 0.64 +0.5 51,736 + TX73_000230 0.64 +1.8 51,736 + TX73_000230 0.64 +0.4 51,736 - TX73_000230 0.64 -0.4 51,741 - TX73_000230 0.65 +0.1 51,744 - TX73_000230 0.65 +0.6 51,744 - TX73_000230 0.65 +0.2 51,744 - TX73_000230 0.65 -1.0 51,751 - TX73_000230 0.66 -0.3 51,756 - TX73_000230 0.66 +1.0 51,757 - TX73_000230 0.66 -0.8 51,781 + TX73_000230 0.69 +1.1 51,783 + TX73_000230 0.69 +0.7 51,783 + TX73_000230 0.69 +1.8 51,783 + TX73_000230 0.69 +0.9 51,788 + TX73_000230 0.70 +0.8 51,788 + TX73_000230 0.70 -2.2 51,788 + TX73_000230 0.70 -0.5 51,788 + TX73_000230 0.70 +0.5 51,788 + TX73_000230 0.70 +1.7 51,788 + TX73_000230 0.70 -0.5 51,788 + TX73_000230 0.70 -1.9 51,788 + TX73_000230 0.70 +1.7 51,788 + TX73_000230 0.70 +0.5 51,788 + TX73_000230 0.70 +0.1 51,788 + TX73_000230 0.70 +0.3 51,788 + TX73_000230 0.70 -1.4 51,788 + TX73_000230 0.70 +1.8 51,788 + TX73_000230 0.70 +0.3 51,788 + TX73_000230 0.70 +0.1 51,788 + TX73_000230 0.70 +2.2 51,788 + TX73_000230 0.70 -3.1 51,788 + TX73_000230 0.70 +0.3 51,788 + TX73_000230 0.70 -0.5 51,788 + TX73_000230 0.70 -0.8 51,788 + TX73_000230 0.70 +0.3 51,789 - TX73_000230 0.70 -2.5 51,791 - TX73_000230 0.70 +0.0 51,791 - TX73_000230 0.70 -0.7 51,796 - TX73_000230 0.70 +0.8 51,796 - TX73_000230 0.70 +0.5 51,796 - TX73_000230 0.70 -0.1 51,796 - TX73_000230 0.70 -0.1 51,796 - TX73_000230 0.70 +0.1 51,796 - TX73_000230 0.70 -1.1 51,796 - TX73_000230 0.70 +0.9 51,796 - TX73_000230 0.70 -1.8 51,796 - TX73_000230 0.70 +0.6 51,796 - TX73_000230 0.70 -0.4 51,796 - TX73_000230 0.70 +0.7 51,796 - TX73_000230 0.70 +0.1 51,796 - TX73_000230 0.70 +0.4 51,796 - TX73_000230 0.70 -1.7 51,796 - TX73_000230 0.70 -1.8 51,796 - TX73_000230 0.70 +0.4 51,796 - TX73_000230 0.70 -0.1 51,796 - TX73_000230 0.70 -0.5 51,796 - TX73_000230 0.70 -0.9 51,796 - TX73_000230 0.70 +0.2 51,798 + TX73_000230 0.71 -1.1 51,827 - TX73_000230 0.74 -1.4 51,835 + TX73_000230 0.74 -2.3 51,839 - TX73_000230 0.75 +0.5 51,853 + TX73_000230 0.76 +2.1 51,883 + TX73_000230 0.79 -1.6 51,891 - TX73_000230 0.80 -1.0 51,891 - TX73_000230 0.80 -0.3 51,893 + TX73_000230 0.80 -3.1 51,896 - TX73_000230 0.81 +1.4 51,902 + TX73_000230 0.81 +0.2 51,910 - TX73_000230 0.82 -2.8 51,912 + TX73_000230 0.82 -0.3 51,912 + TX73_000230 0.82 -0.8 51,912 + TX73_000230 0.82 -0.1 51,912 + TX73_000230 0.82 -2.4 51,912 + TX73_000230 0.82 -1.5 51,912 + TX73_000230 0.82 +0.2 51,912 + TX73_000230 0.82 -0.8 51,912 + TX73_000230 0.82 +1.5 51,912 + TX73_000230 0.82 +0.1 51,912 + TX73_000230 0.82 +1.9 51,917 + TX73_000230 0.83 -0.8 51,917 + TX73_000230 0.83 +1.9 51,920 - TX73_000230 0.83 +0.7 51,920 - TX73_000230 0.83 +1.2 51,920 - TX73_000230 0.83 -1.6 51,920 - TX73_000230 0.83 +0.0 51,920 - TX73_000230 0.83 +0.5 51,920 - TX73_000230 0.83 +0.8 51,920 - TX73_000230 0.83 -2.0 51,920 - TX73_000230 0.83 -1.8 51,920 - TX73_000230 0.83 +0.0 51,922 + TX73_000230 0.83 -0.5 51,930 + TX73_000230 0.84 -1.7 51,958 + TX73_000230 0.87 -0.4 51,973 + TX73_000230 0.89 +0.0 52,032 + +0.3 52,033 + -2.1 52,034 + -0.8 52,041 - -0.3 52,043 + -0.8 52,043 + +0.3 52,051 - +1.5 52,077 + -0.3 52,079 + +1.3 52,079 + +2.1 52,079 + +0.4 52,079 + -0.6 52,085 + +0.2 52,085 - -0.5 52,085 - -1.1 52,093 - -0.7 52,093 - +1.0 52,097 + +3.6 52,105 - +0.3 52,110 + -0.9 52,111 + -0.3 52,111 + -1.9 52,128 + +0.4 52,158 + -0.5 52,167 - -0.9 52,170 + -2.1 52,176 - -0.3 52,178 - -0.4 52,200 + +1.7 52,240 + -0.1 52,319 + -0.0 52,324 + -1.1 52,332 - -0.7 52,337 - -0.0 52,338 + +0.7 52,364 - -0.5 52,389 + -0.3 52,389 + -1.3 52,421 + -0.1 52,421 + +0.3 52,421 + +1.8 52,421 + +2.1 52,429 - +0.7 52,429 - -0.5 52,433 + -0.8 52,441 - -2.6 52,441 - +1.3 52,464 + -0.5 52,464 - +4.0 52,466 + -1.9 52,468 + +0.8 52,474 - -0.4 52,476 + -0.5 52,476 + +0.2 52,476 + +0.6 52,476 + +0.2 52,476 + -2.2 52,476 + -0.4 52,476 + +0.4 52,483 + -0.5 52,484 + +0.0 52,484 - -3.7 52,484 - -1.4 52,484 - +1.1 52,484 - -1.0 52,484 - -1.7 52,484 - -2.1 52,484 - +1.2 53,111 - +0.4 53,113 + +1.4 53,113 + +0.1 53,121 - -0.1 53,121 - -0.4 53,141 - -0.2 53,146 + -0.4 53,186 - -1.4 53,192 + +0.3 53,208 + +0.6 53,208 + -1.0 53,213 + -2.1 53,216 - +0.6 53,237 + +0.7 53,237 + +0.6 53,245 - +0.9 53,245 - +0.5 53,247 + +1.0 53,247 + -0.5 53,257 - -1.2 53,265 - -1.8 53,283 + -0.7 53,293 + -3.3 53,295 + +0.5 53,295 + -0.3 53,295 + -0.9 53,295 + +0.7 53,302 + -0.6 53,302 + +0.1 53,303 - +0.3 53,304 + +1.4 53,310 - +0.1 53,322 - -1.2 53,323 - -2.0 53,331 + -0.0 53,334 - +0.1 53,353 + -0.7 53,355 - -0.3 53,363 + +1.8 53,376 - -0.4 53,386 + -2.0 54,000 - TX73_000245 0.89 +1.4 54,046 + -1.1 54,046 + +0.4 54,046 + +0.8 54,054 - -1.8 54,078 + +0.3 54,086 - -1.5 54,091 + +1.4 54,091 - +2.1 54,098 - -1.4
Or see this region's nucleotide sequence