Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000120

Experiment: NFM with pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000110 and TX73_000115 are separated by 120 nucleotidesTX73_000115 and TX73_000120 are separated by 215 nucleotidesTX73_000120 and TX73_000125 are separated by 111 nucleotides TX73_000110: TX73_000110 - SDR family oxidoreductase, at 23,779 to 24,516 _000110 TX73_000115: TX73_000115 - 2-hydroxychromene-2-carboxylate isomerase, at 24,637 to 25,239 _000115 TX73_000120: TX73_000120 - glutathione S-transferase, at 25,455 to 26,123 _000120 TX73_000125: TX73_000125 - NAD(P)-dependent oxidoreductase, at 26,235 to 27,110 _000125 Position (kb) 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 24.479 kb on + strandat 24.479 kb on + strandat 24.510 kb on + strandat 24.526 kb on + strandat 24.526 kb on + strandat 24.526 kb on + strandat 24.534 kb on - strandat 24.534 kb on - strandat 24.534 kb on - strandat 24.540 kb on - strandat 24.559 kb on - strandat 24.614 kb on - strandat 24.629 kb on + strandat 24.633 kb on + strandat 24.634 kb on + strandat 24.634 kb on + strandat 24.669 kb on + strandat 24.677 kb on - strandat 24.677 kb on - strandat 24.677 kb on - strandat 24.772 kb on - strand, within TX73_000115at 24.826 kb on - strand, within TX73_000115at 24.836 kb on - strand, within TX73_000115at 24.880 kb on - strand, within TX73_000115at 24.987 kb on + strand, within TX73_000115at 25.006 kb on + strand, within TX73_000115at 25.097 kb on + strand, within TX73_000115at 25.127 kb on - strand, within TX73_000115at 25.349 kb on + strandat 25.466 kb on + strandat 25.515 kb on - strandat 25.515 kb on - strandat 25.588 kb on + strand, within TX73_000120at 25.727 kb on + strand, within TX73_000120at 25.727 kb on + strand, within TX73_000120at 25.745 kb on + strand, within TX73_000120at 25.846 kb on - strand, within TX73_000120at 25.865 kb on + strand, within TX73_000120at 25.894 kb on - strand, within TX73_000120at 25.895 kb on + strand, within TX73_000120at 25.978 kb on + strand, within TX73_000120at 26.039 kb on + strand, within TX73_000120at 26.060 kb on + strandat 26.070 kb on + strandat 26.070 kb on + strandat 26.070 kb on + strandat 26.070 kb on + strandat 26.070 kb on + strandat 26.070 kb on + strandat 26.078 kb on - strandat 26.078 kb on - strandat 26.165 kb on + strandat 26.165 kb on + strandat 26.168 kb on - strandat 26.182 kb on + strandat 26.190 kb on - strandat 26.207 kb on + strandat 26.359 kb on + strand, within TX73_000125at 26.362 kb on - strand, within TX73_000125at 26.383 kb on + strand, within TX73_000125at 26.383 kb on + strand, within TX73_000125at 26.388 kb on + strand, within TX73_000125at 26.418 kb on + strand, within TX73_000125at 26.418 kb on + strand, within TX73_000125at 26.426 kb on - strand, within TX73_000125at 26.426 kb on - strand, within TX73_000125at 26.426 kb on - strand, within TX73_000125at 26.443 kb on + strand, within TX73_000125at 26.451 kb on - strand, within TX73_000125at 26.451 kb on - strand, within TX73_000125at 26.531 kb on + strand, within TX73_000125at 26.569 kb on - strand, within TX73_000125at 26.571 kb on + strand, within TX73_000125at 26.624 kb on - strand, within TX73_000125at 26.624 kb on - strand, within TX73_000125at 26.656 kb on - strand, within TX73_000125at 26.680 kb on - strand, within TX73_000125at 26.680 kb on - strand, within TX73_000125at 26.680 kb on - strand, within TX73_000125at 26.680 kb on - strand, within TX73_000125at 26.682 kb on + strand, within TX73_000125at 26.737 kb on - strand, within TX73_000125at 26.773 kb on - strand, within TX73_000125at 26.830 kb on - strand, within TX73_000125at 26.868 kb on - strand, within TX73_000125at 26.902 kb on + strand, within TX73_000125at 26.943 kb on + strand, within TX73_000125at 26.955 kb on + strand, within TX73_000125at 26.963 kb on - strand, within TX73_000125at 26.968 kb on + strand, within TX73_000125at 26.987 kb on + strand, within TX73_000125at 27.094 kb on - strandat 27.096 kb on - strandat 27.101 kb on - strandat 27.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM with pyruvate
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24,479 + -1.4
24,479 + -0.2
24,510 + -0.4
24,526 + +0.3
24,526 + +1.6
24,526 + +1.2
24,534 - -0.8
24,534 - +0.1
24,534 - -3.7
24,540 - -0.7
24,559 - +0.0
24,614 - -1.1
24,629 + -0.6
24,633 + +0.7
24,634 + +1.7
24,634 + +1.3
24,669 + +0.2
24,677 - -1.5
24,677 - -0.2
24,677 - +0.1
24,772 - TX73_000115 0.22 -0.4
24,826 - TX73_000115 0.31 +3.2
24,836 - TX73_000115 0.33 -1.8
24,880 - TX73_000115 0.40 -1.9
24,987 + TX73_000115 0.58 -0.8
25,006 + TX73_000115 0.61 +0.8
25,097 + TX73_000115 0.76 +2.2
25,127 - TX73_000115 0.81 +0.5
25,349 + +1.1
25,466 + +0.4
25,515 - +1.7
25,515 - +1.9
25,588 + TX73_000120 0.20 -1.8
25,727 + TX73_000120 0.41 -1.0
25,727 + TX73_000120 0.41 -0.2
25,745 + TX73_000120 0.43 +0.1
25,846 - TX73_000120 0.58 +0.3
25,865 + TX73_000120 0.61 -2.0
25,894 - TX73_000120 0.66 -0.8
25,895 + TX73_000120 0.66 -1.1
25,978 + TX73_000120 0.78 -1.7
26,039 + TX73_000120 0.87 -2.5
26,060 + +1.4
26,070 + -0.7
26,070 + -0.5
26,070 + +0.5
26,070 + +0.0
26,070 + +2.1
26,070 + -0.6
26,078 - +0.7
26,078 - +0.2
26,165 + -1.2
26,165 + -2.6
26,168 - -0.3
26,182 + -0.9
26,190 - +1.0
26,207 + +0.7
26,359 + TX73_000125 0.14 +0.6
26,362 - TX73_000125 0.14 -0.2
26,383 + TX73_000125 0.17 +1.3
26,383 + TX73_000125 0.17 +2.2
26,388 + TX73_000125 0.17 -0.1
26,418 + TX73_000125 0.21 -1.6
26,418 + TX73_000125 0.21 +0.1
26,426 - TX73_000125 0.22 -0.0
26,426 - TX73_000125 0.22 +1.3
26,426 - TX73_000125 0.22 -2.1
26,443 + TX73_000125 0.24 +0.5
26,451 - TX73_000125 0.25 -0.3
26,451 - TX73_000125 0.25 +2.1
26,531 + TX73_000125 0.34 +2.4
26,569 - TX73_000125 0.38 -2.5
26,571 + TX73_000125 0.38 +0.5
26,624 - TX73_000125 0.44 +0.2
26,624 - TX73_000125 0.44 -1.0
26,656 - TX73_000125 0.48 -0.4
26,680 - TX73_000125 0.51 +0.9
26,680 - TX73_000125 0.51 +1.6
26,680 - TX73_000125 0.51 -1.1
26,680 - TX73_000125 0.51 -0.6
26,682 + TX73_000125 0.51 -0.5
26,737 - TX73_000125 0.57 +2.5
26,773 - TX73_000125 0.61 -1.6
26,830 - TX73_000125 0.68 +0.9
26,868 - TX73_000125 0.72 -2.2
26,902 + TX73_000125 0.76 -1.0
26,943 + TX73_000125 0.81 -1.7
26,955 + TX73_000125 0.82 +1.0
26,963 - TX73_000125 0.83 -1.4
26,968 + TX73_000125 0.84 +1.2
26,987 + TX73_000125 0.86 +0.7
27,094 - +0.5
27,096 - -0.1
27,101 - -1.8
27,103 + -0.9

Or see this region's nucleotide sequence