Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024890

Experiment: NFM with succinate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with succinate
5,404,338	-		TX73_024885	0.41	-1.1
5,404,404	+		TX73_024885	0.46	-0.7
5,404,409	+		TX73_024885	0.46	-0.5
5,404,409	+		TX73_024885	0.46	+0.1
5,404,417	-		TX73_024885	0.47	-0.3
5,404,417	-		TX73_024885	0.47	-0.3
5,404,430	+		TX73_024885	0.48	+0.2
5,404,440	-		TX73_024885	0.48	-0.3
5,404,596	-		TX73_024885	0.60	-0.4
5,404,628	-		TX73_024885	0.63	+0.1
5,404,628	-		TX73_024885	0.63	-0.4
5,404,671	-		TX73_024885	0.66	-0.1
5,404,729	-		TX73_024885	0.70	-1.0
5,404,869	+		TX73_024885	0.81	-1.0
5,404,930	+		TX73_024885	0.85	+0.0
5,404,938	-		TX73_024885	0.86	-2.1
5,405,004	-				-0.0
5,405,021	-				-0.1
5,405,028	-				-0.2
5,405,074	+				-1.9
5,405,077	-				-0.1
5,405,095	+				+0.1
5,405,149	+				-1.1
5,405,219	+				+0.6
5,405,219	+				+0.4
5,405,222	-				-0.4
5,405,222	-				-0.1
5,405,236	+				+0.2
5,405,244	-				-1.8
5,405,244	-				+0.1
5,405,258	+				-0.5
5,405,260	+				+1.1
5,405,268	-				+0.0
5,405,317	-				-0.7
5,405,328	+				+0.0
5,405,329	+				+1.3
5,405,336	-				+0.5
5,405,367	-				-0.6
5,405,399	+				-0.3
5,405,426	-				-0.3
5,405,451	+				+0.4
5,405,456	+				+0.3
5,405,459	-				+0.1
5,405,459	-				+0.4
5,405,484	+				-0.5
5,405,485	+				-0.4
5,405,520	+				-0.4
5,405,521	+				-0.7
5,405,533	+				-0.3
5,405,533	+				-0.3
5,405,568	+		TX73_024890	0.11	-0.5
5,405,578	-		TX73_024890	0.12	-1.2
5,405,629	+		TX73_024890	0.14	-0.2
5,405,629	+		TX73_024890	0.14	-0.0
5,405,629	+		TX73_024890	0.14	+0.6
5,405,629	+		TX73_024890	0.14	+0.6
5,405,637	-		TX73_024890	0.15	-0.1
5,405,637	-		TX73_024890	0.15	+0.0
5,405,637	-		TX73_024890	0.15	-0.3
5,405,657	+		TX73_024890	0.16	+0.2
5,405,670	+		TX73_024890	0.16	+0.9
5,405,673	-		TX73_024890	0.16	-0.9
5,405,698	+		TX73_024890	0.18	-0.5
5,405,718	+		TX73_024890	0.19	+0.1
5,405,730	+		TX73_024890	0.19	+0.5
5,405,730	+		TX73_024890	0.19	+0.4
5,405,732	-		TX73_024890	0.19	+0.0
5,405,738	-		TX73_024890	0.20	-0.3
5,405,745	+		TX73_024890	0.20	+0.4
5,405,784	+		TX73_024890	0.22	-0.8
5,405,792	-		TX73_024890	0.22	+0.2
5,405,792	-		TX73_024890	0.22	-0.3
5,405,832	+		TX73_024890	0.24	-0.8
5,405,872	+		TX73_024890	0.26	+0.3
5,405,880	-		TX73_024890	0.26	-1.3
5,405,889	+		TX73_024890	0.27	+0.4
5,405,889	+		TX73_024890	0.27	-0.5
5,405,992	+		TX73_024890	0.32	-1.2
5,406,033	+		TX73_024890	0.34	-1.2
5,406,070	-		TX73_024890	0.35	-0.4
5,406,097	+		TX73_024890	0.37	+0.4
5,406,105	-		TX73_024890	0.37	-0.1
5,406,105	-		TX73_024890	0.37	-2.0
5,406,122	-		TX73_024890	0.38	-0.2
5,406,171	+		TX73_024890	0.40	-0.4
5,406,262	+		TX73_024890	0.45	-0.3
5,406,262	+		TX73_024890	0.45	-1.3
5,406,270	-		TX73_024890	0.45	-0.1
5,406,280	-		TX73_024890	0.46	-0.3
5,406,291	+		TX73_024890	0.46	+0.3
5,406,299	-		TX73_024890	0.46	-1.0
5,406,355	+		TX73_024890	0.49	+0.3
5,406,403	-		TX73_024890	0.51	-1.0
5,406,403	-		TX73_024890	0.51	-0.5
5,406,412	+		TX73_024890	0.52	-0.5
5,406,474	+		TX73_024890	0.55	-0.2
5,406,521	-		TX73_024890	0.57	-0.2
5,406,584	-		TX73_024890	0.60	-3.2
5,406,622	+		TX73_024890	0.62	-0.1
5,406,642	-		TX73_024890	0.63	+0.1
5,406,649	-		TX73_024890	0.63	-0.0
5,406,664	+		TX73_024890	0.64	-2.0
5,406,664	+		TX73_024890	0.64	-0.1
5,406,664	+		TX73_024890	0.64	-0.2
5,406,672	-		TX73_024890	0.64	-1.0
5,406,678	-		TX73_024890	0.65	-0.3
5,406,687	+		TX73_024890	0.65	+0.2
5,406,696	-		TX73_024890	0.66	+0.0
5,406,738	+		TX73_024890	0.68	+0.5
5,406,792	-		TX73_024890	0.70	+0.6
5,406,797	-		TX73_024890	0.70	-0.3
5,406,833	-		TX73_024890	0.72	-0.1
5,406,848	+		TX73_024890	0.73	+0.2
5,406,888	+		TX73_024890	0.75	-0.8
5,406,891	-		TX73_024890	0.75	-0.7
5,406,922	+		TX73_024890	0.76	-0.6
5,406,930	-		TX73_024890	0.77	+0.7
5,406,931	-		TX73_024890	0.77	+0.4
5,406,933	+		TX73_024890	0.77	-0.3
5,406,935	+		TX73_024890	0.77	-1.6
5,406,941	-		TX73_024890	0.77	+0.1
5,406,941	-		TX73_024890	0.77	+0.1
5,406,943	-		TX73_024890	0.77	+0.2
5,406,995	-		TX73_024890	0.80	-0.3
5,407,006	+		TX73_024890	0.80	-0.0
5,407,006	-		TX73_024890	0.80	-1.1
5,407,006	-		TX73_024890	0.80	+0.5
5,407,012	+		TX73_024890	0.81	-0.1
5,407,016	+		TX73_024890	0.81	+0.4
5,407,017	+		TX73_024890	0.81	+0.4
5,407,084	+		TX73_024890	0.84	-0.3
5,407,090	-		TX73_024890	0.84	-0.0
5,407,161	+		TX73_024890	0.88	+0.6
5,407,166	+		TX73_024890	0.88	+0.1
5,407,169	-		TX73_024890	0.88	-0.2
5,407,169	-		TX73_024890	0.88	-0.7
5,407,192	-		TX73_024890	0.89	+0.4
5,407,211	-				-1.1
5,407,216	-				-0.6
5,407,221	-				-0.4
5,407,227	-				-0.7
5,407,290	-				-0.2
5,407,356	+				-0.8
5,407,394	+				+0.4
5,407,401	+				+0.1
5,407,408	-				+0.4
5,407,409	-				+0.7
5,407,438	+				-0.7
5,407,446	-				+1.0
5,407,498	-				+0.6
5,407,506	+				-0.5
5,407,588	+		TX73_024895	0.12	-0.8
5,407,611	+		TX73_024895	0.13	-0.1
5,407,659	+		TX73_024895	0.16	-0.8
5,407,667	-		TX73_024895	0.16	+0.5
5,407,667	-		TX73_024895	0.16	+0.2
5,407,675	-		TX73_024895	0.17	+0.2
5,407,682	+		TX73_024895	0.17	-0.5
5,407,690	-		TX73_024895	0.18	-0.3
5,407,703	-		TX73_024895	0.18	+0.0
5,407,709	+		TX73_024895	0.19	-0.1
5,407,716	+		TX73_024895	0.19	-0.5
5,407,717	-		TX73_024895	0.19	+0.1
5,407,727	-		TX73_024895	0.20	+0.3
5,407,783	+		TX73_024895	0.23	-0.6
5,407,788	+		TX73_024895	0.23	+0.6
5,407,796	-		TX73_024895	0.24	-0.9
5,407,811	+		TX73_024895	0.25	+0.1
5,407,819	-		TX73_024895	0.25	-0.1
5,407,837	+		TX73_024895	0.26	-0.5
5,407,865	+		TX73_024895	0.28	-0.1
5,407,865	-		TX73_024895	0.28	-0.4
5,407,873	-		TX73_024895	0.28	-0.1
5,407,873	-		TX73_024895	0.28	+0.4
5,407,873	-		TX73_024895	0.28	-0.2
5,407,905	+		TX73_024895	0.30	+0.3
5,407,918	-		TX73_024895	0.31	-0.3
5,407,957	+		TX73_024895	0.33	-0.5
5,407,983	-		TX73_024895	0.35	-0.0
5,407,983	-		TX73_024895	0.35	-0.8
5,407,989	+		TX73_024895	0.35	+0.1
5,408,033	+		TX73_024895	0.37	+0.4
5,408,033	+		TX73_024895	0.37	-0.5
5,408,036	+		TX73_024895	0.38	+0.3
5,408,050	-		TX73_024895	0.38	-0.1
5,408,050	-		TX73_024895	0.38	+0.0
5,408,073	+		TX73_024895	0.40	-0.6
5,408,097	+		TX73_024895	0.41	+0.3
5,408,097	+		TX73_024895	0.41	+0.0
5,408,097	+		TX73_024895	0.41	+0.2
5,408,097	+		TX73_024895	0.41	+0.0
5,408,097	+		TX73_024895	0.41	-0.3
5,408,105	-		TX73_024895	0.42	-0.0
5,408,105	-		TX73_024895	0.42	+0.4
5,408,105	-		TX73_024895	0.42	+1.3
5,408,163	+		TX73_024895	0.45	+0.1
5,408,163	+		TX73_024895	0.45	-1.3
5,408,166	-		TX73_024895	0.45	-1.5
5,408,166	-		TX73_024895	0.45	-0.4
5,408,168	+		TX73_024895	0.45	+0.3
5,408,168	+		TX73_024895	0.45	+0.1
5,408,168	+		TX73_024895	0.45	+0.4
5,408,168	+		TX73_024895	0.45	+0.2
5,408,168	+		TX73_024895	0.45	-0.6
5,408,176	-		TX73_024895	0.46	-0.3
5,408,176	-		TX73_024895	0.46	-0.8
5,408,176	-		TX73_024895	0.46	+0.2
5,408,176	-		TX73_024895	0.46	-0.2
5,408,176	-		TX73_024895	0.46	-0.7
5,408,176	-		TX73_024895	0.46	-0.4
5,408,185	-		TX73_024895	0.46	-0.2
5,408,210	-		TX73_024895	0.48	-0.3
5,408,212	+		TX73_024895	0.48	+0.8
5,408,212	+		TX73_024895	0.48	-2.0
5,408,212	+		TX73_024895	0.48	+0.7
5,408,220	-		TX73_024895	0.48	-0.6
5,408,220	-		TX73_024895	0.48	-0.2
5,408,226	-		TX73_024895	0.49	+0.6
5,408,231	+		TX73_024895	0.49	+1.0
5,408,231	+		TX73_024895	0.49	-3.3
5,408,241	-		TX73_024895	0.49	+0.1
5,408,241	-		TX73_024895	0.49	-0.3
5,408,241	-		TX73_024895	0.49	-0.3
5,408,323	-		TX73_024895	0.54	-0.0
5,408,325	-		TX73_024895	0.54	-0.1
5,408,331	-		TX73_024895	0.55	-1.1
5,408,346	+		TX73_024895	0.55	-0.4
5,408,351	+		TX73_024895	0.56	+0.4
5,408,354	-		TX73_024895	0.56	-0.6
5,408,371	+		TX73_024895	0.57	-0.4
5,408,372	+		TX73_024895	0.57	+0.2
5,408,379	-		TX73_024895	0.57	+0.1
5,408,411	-		TX73_024895	0.59	-0.2