Experiment: NFM with succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023065 and TX73_023070 are separated by 79 nucleotides TX73_023070 and TX73_023075 are separated by 90 nucleotides TX73_023075 and TX73_023080 overlap by 4 nucleotides TX73_023080 and TX73_023085 overlap by 4 nucleotides
TX73_023065: TX73_023065 - DUF1499 domain-containing protein, at 5,019,053 to 5,019,898
_023065
TX73_023070: TX73_023070 - cysteine rich repeat-containing protein, at 5,019,978 to 5,020,265
_023070
TX73_023075: TX73_023075 - periplasmic heavy metal sensor, at 5,020,356 to 5,020,799
_023075
TX73_023080: TX73_023080 - hypothetical protein, at 5,020,796 to 5,021,215
_023080
TX73_023085: TX73_023085 - RNA polymerase sigma factor, at 5,021,212 to 5,021,838
_023085
Position (kb) 5019
5020
5021 Strain fitness (log2 ratio) -1
0
1
2 at 5018.992 kb on + strand at 5019.032 kb on + strand at 5019.063 kb on + strand at 5019.093 kb on + strand at 5019.101 kb on - strand at 5019.101 kb on - strand at 5019.101 kb on - strand at 5019.101 kb on - strand at 5019.130 kb on + strand at 5019.130 kb on + strand at 5019.162 kb on + strand, within TX73_023065 at 5019.236 kb on + strand, within TX73_023065 at 5019.245 kb on - strand, within TX73_023065 at 5019.256 kb on + strand, within TX73_023065 at 5019.319 kb on + strand, within TX73_023065 at 5019.342 kb on - strand, within TX73_023065 at 5019.363 kb on + strand, within TX73_023065 at 5019.375 kb on - strand, within TX73_023065 at 5019.394 kb on - strand, within TX73_023065 at 5019.440 kb on - strand, within TX73_023065 at 5019.460 kb on + strand, within TX73_023065 at 5019.460 kb on + strand, within TX73_023065 at 5019.468 kb on - strand, within TX73_023065 at 5019.468 kb on - strand, within TX73_023065 at 5019.487 kb on + strand, within TX73_023065 at 5019.487 kb on + strand, within TX73_023065 at 5019.487 kb on + strand, within TX73_023065 at 5019.490 kb on - strand, within TX73_023065 at 5019.495 kb on - strand, within TX73_023065 at 5019.546 kb on - strand, within TX73_023065 at 5019.669 kb on + strand, within TX73_023065 at 5019.669 kb on + strand, within TX73_023065 at 5019.682 kb on - strand, within TX73_023065 at 5019.683 kb on - strand, within TX73_023065 at 5019.683 kb on - strand, within TX73_023065 at 5019.733 kb on + strand, within TX73_023065 at 5019.814 kb on + strand at 5019.822 kb on - strand at 5019.822 kb on - strand at 5020.088 kb on + strand, within TX73_023070 at 5020.149 kb on + strand, within TX73_023070 at 5020.203 kb on + strand, within TX73_023070 at 5020.211 kb on - strand, within TX73_023070 at 5020.258 kb on + strand at 5020.324 kb on + strand at 5020.331 kb on - strand at 5020.814 kb on - strand at 5020.844 kb on - strand, within TX73_023080 at 5020.957 kb on - strand, within TX73_023080 at 5020.995 kb on - strand, within TX73_023080 at 5021.011 kb on + strand, within TX73_023080 at 5021.019 kb on - strand, within TX73_023080
Per-strain Table
Position Strand Gene LocusTag Fraction NFM with succinate remove 5,018,992 + -0.3 5,019,032 + +0.6 5,019,063 + -0.7 5,019,093 + +1.2 5,019,101 - +0.6 5,019,101 - +1.5 5,019,101 - +0.9 5,019,101 - +0.1 5,019,130 + -0.4 5,019,130 + +1.4 5,019,162 + TX73_023065 0.13 +0.5 5,019,236 + TX73_023065 0.22 +0.3 5,019,245 - TX73_023065 0.23 -0.2 5,019,256 + TX73_023065 0.24 +2.1 5,019,319 + TX73_023065 0.31 +1.3 5,019,342 - TX73_023065 0.34 -0.3 5,019,363 + TX73_023065 0.37 +0.6 5,019,375 - TX73_023065 0.38 +0.7 5,019,394 - TX73_023065 0.40 +1.6 5,019,440 - TX73_023065 0.46 +1.5 5,019,460 + TX73_023065 0.48 -0.4 5,019,460 + TX73_023065 0.48 +0.4 5,019,468 - TX73_023065 0.49 +1.0 5,019,468 - TX73_023065 0.49 -1.6 5,019,487 + TX73_023065 0.51 +0.3 5,019,487 + TX73_023065 0.51 +2.0 5,019,487 + TX73_023065 0.51 -0.3 5,019,490 - TX73_023065 0.52 +0.3 5,019,495 - TX73_023065 0.52 -0.7 5,019,546 - TX73_023065 0.58 -0.3 5,019,669 + TX73_023065 0.73 +1.0 5,019,669 + TX73_023065 0.73 +2.5 5,019,682 - TX73_023065 0.74 +0.3 5,019,683 - TX73_023065 0.74 -0.4 5,019,683 - TX73_023065 0.74 +0.3 5,019,733 + TX73_023065 0.80 -0.7 5,019,814 + +0.4 5,019,822 - +0.3 5,019,822 - +0.4 5,020,088 + TX73_023070 0.38 -0.5 5,020,149 + TX73_023070 0.59 +0.4 5,020,203 + TX73_023070 0.78 +0.2 5,020,211 - TX73_023070 0.81 +0.6 5,020,258 + +0.5 5,020,324 + -0.4 5,020,331 - +0.2 5,020,814 - -0.0 5,020,844 - TX73_023080 0.11 -0.9 5,020,957 - TX73_023080 0.38 +0.2 5,020,995 - TX73_023080 0.47 -0.9 5,021,011 + TX73_023080 0.51 -1.5 5,021,019 - TX73_023080 0.53 -0.7
Or see this region's nucleotide sequence