Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_018815

Experiment: NFM with succinate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with succinate
4,090,522	-		TX73_018805	0.62	-0.6
4,090,529	+		TX73_018805	0.62	-0.4
4,090,537	-		TX73_018805	0.63	+0.0
4,090,562	-		TX73_018805	0.65	+0.8
4,090,678	+		TX73_018805	0.73	+0.7
4,090,689	-		TX73_018805	0.74	+0.6
4,090,769	+		TX73_018805	0.80	+0.1
4,090,777	+		TX73_018805	0.80	+0.7
4,090,787	+		TX73_018805	0.81	+0.2
4,090,807	+		TX73_018805	0.82	-0.0
4,090,807	+		TX73_018805	0.82	+0.6
4,090,844	-		TX73_018805	0.85	+0.9
4,090,882	+		TX73_018805	0.88	-0.7
4,090,893	+		TX73_018805	0.88	-0.7
4,090,940	-				-0.7
4,090,947	-				+0.4
4,090,947	-				-0.0
4,090,957	-				-0.7
4,090,962	-				+0.1
4,090,971	+				-0.1
4,090,977	-				+0.0
4,091,011	+				+1.3
4,091,014	-				+0.3
4,091,016	+				-0.0
4,091,029	-				-0.1
4,091,076	+				+0.0
4,091,111	+				-0.6
4,091,125	+				+1.6
4,091,133	-				+0.2
4,091,179	-		TX73_018810	0.21	+0.9
4,091,215	+		TX73_018810	0.34	+0.1
4,091,223	-		TX73_018810	0.38	+0.3
4,091,223	-		TX73_018810	0.38	+0.3
4,091,231	+		TX73_018810	0.41	-0.1
4,091,243	-		TX73_018810	0.45	+0.0
4,091,243	-		TX73_018810	0.45	+0.3
4,091,256	+		TX73_018810	0.50	+0.2
4,091,285	+		TX73_018810	0.62	+0.7
4,091,290	+		TX73_018810	0.64	-0.3
4,091,292	+		TX73_018810	0.64	+1.0
4,091,292	+		TX73_018810	0.64	+0.9
4,091,300	-		TX73_018810	0.67	+1.8
4,091,300	-		TX73_018810	0.67	+0.3
4,091,312	+		TX73_018810	0.72	+0.2
4,091,315	-		TX73_018810	0.73	-0.3
4,091,361	+				+1.2
4,091,403	+				-0.8
4,091,403	+				+0.3
4,091,403	+				+0.2
4,091,403	+				-0.4
4,091,403	+				-0.1
4,091,411	-				+1.0
4,091,411	-				+0.4
4,091,412	+				-1.1
4,091,423	-				-0.1
4,091,430	+				-0.6
4,091,432	+				+0.2
4,091,440	-				+0.8
4,091,441	-				-0.4
4,091,452	+				+0.5
4,091,452	+				+2.0
4,091,452	+				+0.9
4,091,452	+				+0.3
4,091,452	+				-0.0
4,091,452	+				-0.1
4,091,452	+				+0.5
4,091,452	+				-0.2
4,091,455	-				-0.8
4,091,455	-				-0.1
4,091,460	-				-0.8
4,091,460	-				-0.1
4,091,460	-				-0.7
4,091,460	-				+0.1
4,091,460	-				+0.4
4,091,460	-				+0.4
4,091,460	-				+0.6
4,091,460	-				-0.1
4,091,460	-				-1.2
4,091,471	+				+0.3
4,091,471	+				+0.0
4,091,479	-				+0.0
4,091,481	-				-0.1
4,091,499	+				-0.1
4,091,513	+				+0.5
4,091,521	-				+0.5
4,091,556	-				+0.2
4,091,577	+				-0.8
4,091,582	+				+0.8
4,091,584	+				-0.3
4,091,590	-				+0.3
4,091,653	+		TX73_018815	0.13	-0.2
4,091,661	+		TX73_018815	0.14	+0.4
4,091,713	+		TX73_018815	0.19	-1.8
4,091,729	+		TX73_018815	0.21	-0.4
4,091,747	-		TX73_018815	0.23	-0.1
4,091,747	-		TX73_018815	0.23	-0.0
4,091,774	+		TX73_018815	0.26	-0.6
4,091,774	+		TX73_018815	0.26	-0.8
4,091,778	-		TX73_018815	0.26	-0.9
4,091,780	+		TX73_018815	0.26	-1.3
4,091,851	-		TX73_018815	0.33	-0.0
4,091,878	+		TX73_018815	0.36	-0.5
4,091,900	+		TX73_018815	0.38	-0.0
4,091,900	+		TX73_018815	0.38	-0.3
4,091,908	-		TX73_018815	0.39	-0.4
4,091,908	-		TX73_018815	0.39	+0.1
4,091,913	-		TX73_018815	0.40	-0.3
4,091,915	-		TX73_018815	0.40	-1.3
4,091,916	+		TX73_018815	0.40	-0.3
4,091,916	+		TX73_018815	0.40	-0.0
4,091,924	-		TX73_018815	0.41	+0.4
4,091,924	-		TX73_018815	0.41	-1.0
4,091,924	-		TX73_018815	0.41	-1.0
4,091,943	-		TX73_018815	0.43	-0.1
4,091,948	-		TX73_018815	0.43	+0.6
4,091,958	-		TX73_018815	0.44	+1.5
4,092,023	+		TX73_018815	0.51	-0.1
4,092,038	-		TX73_018815	0.52	+1.1
4,092,047	+		TX73_018815	0.53	-0.2
4,092,047	+		TX73_018815	0.53	+0.2
4,092,055	-		TX73_018815	0.54	+0.3
4,092,055	-		TX73_018815	0.54	-0.6
4,092,136	+		TX73_018815	0.62	+0.0
4,092,136	+		TX73_018815	0.62	-0.0
4,092,136	+		TX73_018815	0.62	-0.7
4,092,136	+		TX73_018815	0.62	-0.8
4,092,136	+		TX73_018815	0.62	+0.0
4,092,142	-		TX73_018815	0.63	+0.8
4,092,142	-		TX73_018815	0.63	+0.3
4,092,142	-		TX73_018815	0.63	+0.5
4,092,144	-		TX73_018815	0.63	-0.6
4,092,144	-		TX73_018815	0.63	+0.1
4,092,159	+		TX73_018815	0.65	-0.4
4,092,182	+		TX73_018815	0.67	+0.7
4,092,194	-		TX73_018815	0.68	-0.4
4,092,206	+		TX73_018815	0.69	-0.8
4,092,214	-		TX73_018815	0.70	+0.2
4,092,214	-		TX73_018815	0.70	+0.5
4,092,266	-		TX73_018815	0.75	+0.6
4,092,276	-		TX73_018815	0.76	-0.4
4,092,298	+		TX73_018815	0.79	-0.4
4,092,313	+		TX73_018815	0.80	-0.3
4,092,351	+		TX73_018815	0.84	+0.2
4,092,359	-		TX73_018815	0.85	+0.4
4,092,359	-		TX73_018815	0.85	-0.8
4,092,375	-		TX73_018815	0.86	-2.2
4,092,385	-		TX73_018815	0.87	+0.1
4,092,418	-				-1.7
4,092,423	-				+0.1
4,092,423	-				-0.5
4,092,435	+				-0.2
4,092,440	+				+0.0
4,092,504	+				+0.5
4,092,551	+				+0.2
4,092,594	-				+0.2
4,092,604	-		TX73_018820	0.11	+0.2
4,092,618	+		TX73_018820	0.13	+0.3
4,092,621	-		TX73_018820	0.13	+0.4
4,092,631	-		TX73_018820	0.14	-0.1
4,092,636	-		TX73_018820	0.15	+0.7
4,092,636	-		TX73_018820	0.15	+1.0
4,092,641	+		TX73_018820	0.16	+0.1
4,092,649	-		TX73_018820	0.17	-0.4
4,092,649	-		TX73_018820	0.17	+0.4
4,092,700	+		TX73_018820	0.23	+0.2
4,092,700	+		TX73_018820	0.23	+1.4
4,092,705	+		TX73_018820	0.24	-1.1
4,092,708	-		TX73_018820	0.24	+0.7
4,092,708	-		TX73_018820	0.24	+0.2
4,092,802	-		TX73_018820	0.37	+0.8
4,092,802	-		TX73_018820	0.37	+0.5
4,092,810	-		TX73_018820	0.38	-0.0
4,092,812	+		TX73_018820	0.38	+0.7
4,092,825	-		TX73_018820	0.40	-0.6
4,092,827	+		TX73_018820	0.40	-1.4
4,092,827	+		TX73_018820	0.40	+0.1
4,092,832	+		TX73_018820	0.40	+0.1
4,092,835	-		TX73_018820	0.41	+0.7
4,092,835	-		TX73_018820	0.41	-0.5
4,092,866	-		TX73_018820	0.45	+0.2
4,092,866	-		TX73_018820	0.45	+0.6
4,092,872	+		TX73_018820	0.46	-0.1
4,092,899	-		TX73_018820	0.49	-0.5
4,092,902	-		TX73_018820	0.49	+0.6
4,092,908	-		TX73_018820	0.50	+0.2
4,092,941	-		TX73_018820	0.55	+0.0
4,092,943	+		TX73_018820	0.55	+0.9
4,092,943	+		TX73_018820	0.55	+0.1
4,092,943	+		TX73_018820	0.55	-0.0
4,092,943	+		TX73_018820	0.55	-0.7
4,092,943	+		TX73_018820	0.55	-0.1
4,092,943	+		TX73_018820	0.55	+0.5
4,092,949	-		TX73_018820	0.56	-0.5
4,092,951	-		TX73_018820	0.56	+0.1
4,092,951	-		TX73_018820	0.56	-0.1
4,092,951	-		TX73_018820	0.56	-0.3
4,093,075	+		TX73_018820	0.72	+0.1
4,093,115	+		TX73_018820	0.77	+0.1
4,093,159	+		TX73_018820	0.83	+0.0
4,093,167	-		TX73_018820	0.84	-0.1
4,093,171	-		TX73_018820	0.84	-0.5
4,093,213	+		TX73_018820	0.90	+0.8
4,093,213	+		TX73_018820	0.90	+0.0
4,093,240	-				+0.9
4,093,263	+				+0.3
4,093,288	+				-0.3
4,093,432	-				-0.9
4,093,486	+		TX73_018825	0.20	-0.5
4,093,491	+		TX73_018825	0.21	-0.4
4,093,491	+		TX73_018825	0.21	+1.0