Experiment: NFM with succinate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002780 and TX73_002785 are separated by 739 nucleotides TX73_002785 and TX73_002790 are separated by 589 nucleotides
TX73_002780: TX73_002780 - acetyl-CoA hydrolase/transferase family protein, at 598,416 to 599,975
_002780
TX73_002785: TX73_002785 - porin, at 600,715 to 602,169
_002785
TX73_002790: TX73_002790 - MarR family winged helix-turn-helix transcriptional regulator, at 602,759 to 603,271
_002790
Position (kb) 600
601
602
603 Strain fitness (log2 ratio) -2
-1
0
1 at 599.730 kb on - strand, within TX73_002780 at 599.734 kb on + strand, within TX73_002780 at 599.835 kb on + strand at 599.922 kb on + strand at 599.923 kb on + strand at 599.973 kb on - strand at 599.973 kb on - strand at 599.998 kb on - strand at 600.000 kb on + strand at 600.029 kb on + strand at 600.048 kb on + strand at 600.068 kb on + strand at 600.143 kb on + strand at 600.158 kb on + strand at 600.195 kb on + strand at 600.198 kb on - strand at 600.200 kb on - strand at 600.203 kb on - strand at 600.248 kb on - strand at 600.248 kb on - strand at 600.330 kb on - strand at 600.344 kb on + strand at 600.352 kb on + strand at 600.352 kb on - strand at 600.393 kb on + strand at 600.395 kb on + strand at 600.430 kb on - strand at 600.515 kb on + strand at 600.524 kb on - strand at 600.552 kb on + strand at 600.552 kb on + strand at 600.558 kb on - strand at 600.721 kb on - strand at 600.811 kb on - strand at 600.824 kb on - strand at 600.826 kb on - strand at 600.826 kb on - strand at 600.831 kb on + strand at 600.852 kb on - strand at 600.968 kb on + strand, within TX73_002785 at 600.981 kb on - strand, within TX73_002785 at 601.076 kb on + strand, within TX73_002785 at 601.125 kb on - strand, within TX73_002785 at 601.309 kb on + strand, within TX73_002785 at 601.318 kb on + strand, within TX73_002785 at 601.318 kb on + strand, within TX73_002785 at 601.328 kb on + strand, within TX73_002785 at 601.332 kb on + strand, within TX73_002785 at 601.333 kb on + strand, within TX73_002785 at 601.368 kb on - strand, within TX73_002785 at 601.386 kb on - strand, within TX73_002785 at 601.481 kb on + strand, within TX73_002785 at 601.528 kb on - strand, within TX73_002785 at 601.534 kb on - strand, within TX73_002785 at 601.556 kb on - strand, within TX73_002785 at 601.607 kb on + strand, within TX73_002785 at 601.607 kb on + strand, within TX73_002785 at 601.607 kb on + strand, within TX73_002785 at 601.615 kb on - strand, within TX73_002785 at 601.615 kb on - strand, within TX73_002785 at 601.889 kb on + strand, within TX73_002785 at 601.930 kb on - strand, within TX73_002785 at 601.951 kb on - strand, within TX73_002785 at 601.953 kb on - strand, within TX73_002785 at 601.960 kb on + strand, within TX73_002785 at 602.075 kb on + strand at 602.083 kb on - strand at 602.109 kb on - strand at 602.135 kb on + strand at 602.138 kb on - strand at 602.143 kb on - strand at 602.143 kb on - strand at 602.143 kb on - strand at 602.143 kb on - strand at 602.143 kb on - strand at 602.143 kb on - strand at 602.184 kb on - strand at 602.184 kb on - strand at 602.184 kb on - strand at 602.192 kb on + strand at 602.195 kb on + strand at 602.209 kb on - strand at 602.210 kb on + strand at 602.210 kb on + strand at 602.218 kb on - strand at 602.218 kb on - strand at 602.220 kb on + strand at 602.220 kb on + strand at 602.220 kb on + strand at 602.228 kb on - strand at 602.228 kb on - strand at 602.228 kb on - strand at 602.228 kb on - strand at 602.228 kb on - strand at 602.231 kb on + strand at 602.246 kb on + strand at 602.246 kb on + strand at 602.252 kb on - strand at 602.260 kb on + strand at 602.272 kb on + strand at 602.280 kb on - strand at 602.293 kb on - strand at 602.293 kb on - strand at 602.297 kb on + strand at 602.301 kb on + strand at 602.411 kb on - strand at 602.430 kb on + strand at 602.430 kb on + strand at 602.432 kb on + strand at 602.438 kb on - strand at 602.438 kb on - strand at 602.447 kb on + strand at 602.448 kb on - strand at 602.449 kb on + strand at 602.459 kb on + strand at 602.484 kb on + strand at 602.501 kb on + strand at 602.508 kb on + strand at 602.513 kb on + strand at 602.523 kb on + strand at 602.530 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.535 kb on + strand at 602.538 kb on - strand at 602.538 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.543 kb on - strand at 602.546 kb on + strand at 602.546 kb on + strand at 602.553 kb on + strand at 602.553 kb on + strand at 602.554 kb on - strand at 602.571 kb on + strand at 602.579 kb on - strand at 602.579 kb on - strand at 602.579 kb on - strand at 602.588 kb on - strand at 602.593 kb on + strand at 602.613 kb on - strand at 602.631 kb on + strand at 602.641 kb on - strand at 602.658 kb on + strand at 602.658 kb on + strand at 602.658 kb on + strand at 602.658 kb on + strand at 602.658 kb on + strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.666 kb on - strand at 602.713 kb on + strand at 602.715 kb on + strand at 602.715 kb on + strand at 602.716 kb on - strand at 602.721 kb on - strand at 602.721 kb on - strand at 602.726 kb on - strand at 602.727 kb on - strand at 602.759 kb on + strand at 602.767 kb on - strand at 602.770 kb on + strand at 602.770 kb on + strand at 602.770 kb on + strand at 602.772 kb on - strand at 602.772 kb on - strand at 602.778 kb on - strand at 602.778 kb on - strand at 602.778 kb on - strand at 602.785 kb on - strand at 602.806 kb on + strand at 602.811 kb on + strand, within TX73_002790 at 602.811 kb on + strand, within TX73_002790 at 602.811 kb on + strand, within TX73_002790 at 602.811 kb on + strand, within TX73_002790 at 602.811 kb on + strand, within TX73_002790 at 602.814 kb on - strand, within TX73_002790 at 602.819 kb on - strand, within TX73_002790 at 602.819 kb on - strand, within TX73_002790 at 602.819 kb on - strand, within TX73_002790 at 602.819 kb on - strand, within TX73_002790 at 602.819 kb on - strand, within TX73_002790 at 602.819 kb on - strand, within TX73_002790 at 602.871 kb on + strand, within TX73_002790 at 602.879 kb on - strand, within TX73_002790 at 602.894 kb on - strand, within TX73_002790 at 602.924 kb on + strand, within TX73_002790 at 602.926 kb on + strand, within TX73_002790 at 602.926 kb on + strand, within TX73_002790 at 602.926 kb on + strand, within TX73_002790 at 602.926 kb on + strand, within TX73_002790 at 602.926 kb on + strand, within TX73_002790 at 602.926 kb on + strand, within TX73_002790 at 602.926 kb on + strand, within TX73_002790 at 602.934 kb on + strand, within TX73_002790 at 602.934 kb on - strand, within TX73_002790 at 602.934 kb on - strand, within TX73_002790 at 602.934 kb on - strand, within TX73_002790 at 602.934 kb on - strand, within TX73_002790 at 602.943 kb on + strand, within TX73_002790 at 602.943 kb on + strand, within TX73_002790 at 602.951 kb on - strand, within TX73_002790 at 602.961 kb on - strand, within TX73_002790 at 602.990 kb on + strand, within TX73_002790 at 602.992 kb on - strand, within TX73_002790 at 602.998 kb on - strand, within TX73_002790 at 603.015 kb on - strand, within TX73_002790 at 603.015 kb on - strand, within TX73_002790 at 603.022 kb on + strand, within TX73_002790 at 603.034 kb on + strand, within TX73_002790 at 603.037 kb on + strand, within TX73_002790 at 603.044 kb on + strand, within TX73_002790 at 603.077 kb on - strand, within TX73_002790 at 603.077 kb on - strand, within TX73_002790 at 603.104 kb on + strand, within TX73_002790 at 603.109 kb on + strand, within TX73_002790 at 603.111 kb on + strand, within TX73_002790 at 603.133 kb on + strand, within TX73_002790 at 603.141 kb on - strand, within TX73_002790 at 603.141 kb on - strand, within TX73_002790
Per-strain Table
Position Strand Gene LocusTag Fraction NFM with succinate remove 599,730 - TX73_002780 0.84 +0.7 599,734 + TX73_002780 0.84 -1.9 599,835 + -0.1 599,922 + +1.0 599,923 + -0.7 599,973 - -0.1 599,973 - -0.1 599,998 - +0.1 600,000 + -1.0 600,029 + -0.2 600,048 + -0.1 600,068 + +1.1 600,143 + -0.1 600,158 + -1.0 600,195 + +0.3 600,198 - +0.2 600,200 - +0.0 600,203 - +0.6 600,248 - -0.1 600,248 - +0.0 600,330 - -0.1 600,344 + -0.2 600,352 + -0.7 600,352 - -0.3 600,393 + -0.7 600,395 + -0.3 600,430 - +0.3 600,515 + -0.8 600,524 - -0.0 600,552 + -0.3 600,552 + +0.3 600,558 - +0.0 600,721 - +0.4 600,811 - +0.4 600,824 - -0.5 600,826 - -1.1 600,826 - +0.2 600,831 + -0.2 600,852 - +0.5 600,968 + TX73_002785 0.17 -0.2 600,981 - TX73_002785 0.18 -0.6 601,076 + TX73_002785 0.25 -0.0 601,125 - TX73_002785 0.28 +0.4 601,309 + TX73_002785 0.41 +0.4 601,318 + TX73_002785 0.41 +0.1 601,318 + TX73_002785 0.41 +0.3 601,328 + TX73_002785 0.42 -0.5 601,332 + TX73_002785 0.42 -0.2 601,333 + TX73_002785 0.42 +0.4 601,368 - TX73_002785 0.45 +1.2 601,386 - TX73_002785 0.46 +0.7 601,481 + TX73_002785 0.53 -0.1 601,528 - TX73_002785 0.56 -0.5 601,534 - TX73_002785 0.56 +0.4 601,556 - TX73_002785 0.58 -0.7 601,607 + TX73_002785 0.61 -0.2 601,607 + TX73_002785 0.61 -0.1 601,607 + TX73_002785 0.61 +0.0 601,615 - TX73_002785 0.62 +0.5 601,615 - TX73_002785 0.62 -1.1 601,889 + TX73_002785 0.81 +0.0 601,930 - TX73_002785 0.84 +0.0 601,951 - TX73_002785 0.85 -0.1 601,953 - TX73_002785 0.85 -1.1 601,960 + TX73_002785 0.86 +0.9 602,075 + -0.6 602,083 - +0.2 602,109 - +0.1 602,135 + +0.2 602,138 - -1.2 602,143 - +0.1 602,143 - -0.2 602,143 - -0.5 602,143 - +0.1 602,143 - +0.2 602,143 - +0.2 602,184 - -0.0 602,184 - -0.7 602,184 - +0.3 602,192 + +0.5 602,195 + -0.2 602,209 - +0.1 602,210 + -0.3 602,210 + +0.4 602,218 - +0.1 602,218 - +0.2 602,220 + +0.2 602,220 + -0.4 602,220 + +0.3 602,228 - -0.2 602,228 - -1.0 602,228 - +0.2 602,228 - +0.3 602,228 - +0.7 602,231 + -0.7 602,246 + -0.9 602,246 + -1.1 602,252 - +0.2 602,260 + -0.6 602,272 + -0.6 602,280 - +0.0 602,293 - -0.3 602,293 - -0.2 602,297 + -0.4 602,301 + -0.5 602,411 - +0.2 602,430 + +0.2 602,430 + +0.3 602,432 + -0.1 602,438 - -0.3 602,438 - -1.2 602,447 + -0.1 602,448 - +0.6 602,449 + -0.0 602,459 + -0.8 602,484 + +0.8 602,501 + +0.2 602,508 + -0.2 602,513 + +0.2 602,523 + -0.2 602,530 + +0.2 602,535 + -0.9 602,535 + -0.5 602,535 + +0.3 602,535 + -0.3 602,535 + -0.3 602,535 + -0.1 602,535 + +0.0 602,535 + +0.8 602,535 + -0.1 602,535 + -0.6 602,538 - -0.7 602,538 - -0.3 602,543 - +0.2 602,543 - -0.3 602,543 - +0.3 602,543 - +0.7 602,543 - -0.2 602,543 - -0.2 602,543 - +0.5 602,543 - +0.1 602,543 - +0.0 602,543 - -0.6 602,543 - -0.1 602,546 + +0.1 602,546 + -0.1 602,553 + +0.3 602,553 + -0.6 602,554 - -0.8 602,571 + -2.0 602,579 - -0.3 602,579 - -1.1 602,579 - -0.3 602,588 - -0.1 602,593 + -0.1 602,613 - -0.2 602,631 + +0.3 602,641 - -0.2 602,658 + +0.1 602,658 + +0.0 602,658 + +0.2 602,658 + -0.1 602,658 + -0.4 602,666 - +1.3 602,666 - -0.3 602,666 - +0.4 602,666 - +0.5 602,666 - -0.1 602,666 - +1.1 602,666 - +1.6 602,666 - -0.5 602,666 - -0.3 602,713 + -0.9 602,715 + -0.4 602,715 + +0.1 602,716 - -0.3 602,721 - -0.5 602,721 - -0.4 602,726 - +0.1 602,727 - -1.4 602,759 + +0.0 602,767 - -1.3 602,770 + -0.1 602,770 + -0.5 602,770 + +0.4 602,772 - -0.1 602,772 - +0.7 602,778 - -0.3 602,778 - +0.5 602,778 - +0.0 602,785 - -0.2 602,806 + -0.6 602,811 + TX73_002790 0.10 -0.2 602,811 + TX73_002790 0.10 +0.0 602,811 + TX73_002790 0.10 -0.7 602,811 + TX73_002790 0.10 +0.4 602,811 + TX73_002790 0.10 -0.7 602,814 - TX73_002790 0.11 -0.4 602,819 - TX73_002790 0.12 -0.7 602,819 - TX73_002790 0.12 -0.5 602,819 - TX73_002790 0.12 -0.1 602,819 - TX73_002790 0.12 -0.2 602,819 - TX73_002790 0.12 +0.1 602,819 - TX73_002790 0.12 -0.2 602,871 + TX73_002790 0.22 -0.5 602,879 - TX73_002790 0.23 +0.1 602,894 - TX73_002790 0.26 -1.0 602,924 + TX73_002790 0.32 +0.2 602,926 + TX73_002790 0.33 -0.1 602,926 + TX73_002790 0.33 +0.3 602,926 + TX73_002790 0.33 -0.4 602,926 + TX73_002790 0.33 -0.2 602,926 + TX73_002790 0.33 -0.2 602,926 + TX73_002790 0.33 +0.3 602,926 + TX73_002790 0.33 -0.3 602,934 + TX73_002790 0.34 +0.1 602,934 - TX73_002790 0.34 +0.0 602,934 - TX73_002790 0.34 +0.0 602,934 - TX73_002790 0.34 +0.2 602,934 - TX73_002790 0.34 +1.3 602,943 + TX73_002790 0.36 -0.2 602,943 + TX73_002790 0.36 +0.0 602,951 - TX73_002790 0.37 -0.2 602,961 - TX73_002790 0.39 -0.5 602,990 + TX73_002790 0.45 -0.0 602,992 - TX73_002790 0.45 -0.3 602,998 - TX73_002790 0.47 -0.4 603,015 - TX73_002790 0.50 +0.1 603,015 - TX73_002790 0.50 -1.3 603,022 + TX73_002790 0.51 -1.1 603,034 + TX73_002790 0.54 -0.4 603,037 + TX73_002790 0.54 -0.2 603,044 + TX73_002790 0.56 -0.1 603,077 - TX73_002790 0.62 -1.0 603,077 - TX73_002790 0.62 -0.8 603,104 + TX73_002790 0.67 -0.5 603,109 + TX73_002790 0.68 -1.1 603,111 + TX73_002790 0.69 -1.7 603,133 + TX73_002790 0.73 +0.2 603,141 - TX73_002790 0.74 +0.2 603,141 - TX73_002790 0.74 -0.8
Or see this region's nucleotide sequence