Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023965

Experiment: NFM with succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_023950 and TX73_023955 are separated by 17 nucleotidesTX73_023955 and TX73_023960 are separated by 60 nucleotidesTX73_023960 and TX73_023965 are separated by 18 nucleotidesTX73_023965 and TX73_023970 are separated by 1 nucleotidesTX73_023970 and TX73_023975 are separated by 55 nucleotides TX73_023950: TX73_023950 - nitrogen fixation protein NifQ, at 5,196,536 to 5,197,246 _023950 TX73_023955: TX73_023955 - ferredoxin III, nif-specific, at 5,197,264 to 5,197,575 _023955 TX73_023960: TX73_023960 - CCE_0567 family metalloprotein, at 5,197,636 to 5,197,842 _023960 TX73_023965: TX73_023965 - NifX-associated nitrogen fixation protein, at 5,197,861 to 5,198,325 _023965 TX73_023970: TX73_023970 - nitrogen fixation protein NifX, at 5,198,327 to 5,198,725 _023970 TX73_023975: TX73_023975 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 5,198,781 to 5,200,154 _023975 Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -3 -2 -1 0 1at 5196.873 kb on - strand, within TX73_023950at 5196.940 kb on + strand, within TX73_023950at 5197.017 kb on + strand, within TX73_023950at 5197.017 kb on + strand, within TX73_023950at 5197.071 kb on + strand, within TX73_023950at 5197.105 kb on - strand, within TX73_023950at 5197.106 kb on + strand, within TX73_023950at 5197.114 kb on - strand, within TX73_023950at 5197.114 kb on - strand, within TX73_023950at 5197.140 kb on + strand, within TX73_023950at 5197.143 kb on + strand, within TX73_023950at 5197.166 kb on + strand, within TX73_023950at 5197.236 kb on + strandat 5197.265 kb on - strandat 5197.267 kb on - strandat 5197.283 kb on + strandat 5197.291 kb on - strandat 5197.296 kb on - strand, within TX73_023955at 5197.305 kb on + strand, within TX73_023955at 5197.305 kb on + strand, within TX73_023955at 5197.313 kb on - strand, within TX73_023955at 5197.313 kb on - strand, within TX73_023955at 5197.313 kb on - strand, within TX73_023955at 5197.313 kb on - strand, within TX73_023955at 5197.313 kb on - strand, within TX73_023955at 5197.317 kb on + strand, within TX73_023955at 5197.447 kb on + strand, within TX73_023955at 5197.455 kb on - strand, within TX73_023955at 5197.469 kb on + strand, within TX73_023955at 5197.476 kb on + strand, within TX73_023955at 5197.476 kb on + strand, within TX73_023955at 5197.484 kb on - strand, within TX73_023955at 5197.669 kb on + strand, within TX73_023960at 5197.669 kb on - strand, within TX73_023960at 5197.679 kb on + strand, within TX73_023960at 5197.679 kb on + strand, within TX73_023960at 5197.687 kb on - strand, within TX73_023960at 5197.759 kb on - strand, within TX73_023960at 5197.778 kb on - strand, within TX73_023960at 5197.859 kb on + strandat 5197.874 kb on - strandat 5198.039 kb on + strand, within TX73_023965at 5198.053 kb on - strand, within TX73_023965at 5198.064 kb on + strand, within TX73_023965at 5198.094 kb on - strand, within TX73_023965at 5198.113 kb on - strand, within TX73_023965at 5198.113 kb on - strand, within TX73_023965at 5198.163 kb on - strand, within TX73_023965at 5198.232 kb on - strand, within TX73_023965at 5198.232 kb on - strand, within TX73_023965at 5198.234 kb on - strand, within TX73_023965at 5198.242 kb on + strand, within TX73_023965at 5198.257 kb on - strand, within TX73_023965at 5198.266 kb on - strand, within TX73_023965at 5198.266 kb on - strand, within TX73_023965at 5198.267 kb on - strand, within TX73_023965at 5198.325 kb on + strandat 5198.325 kb on + strandat 5198.333 kb on - strandat 5198.333 kb on - strandat 5198.369 kb on + strand, within TX73_023970at 5198.372 kb on - strand, within TX73_023970at 5198.381 kb on + strand, within TX73_023970at 5198.384 kb on - strand, within TX73_023970at 5198.415 kb on + strand, within TX73_023970at 5198.415 kb on + strand, within TX73_023970at 5198.422 kb on + strand, within TX73_023970at 5198.474 kb on + strand, within TX73_023970at 5198.518 kb on - strand, within TX73_023970at 5198.525 kb on + strand, within TX73_023970at 5198.533 kb on - strand, within TX73_023970at 5198.573 kb on + strand, within TX73_023970at 5198.621 kb on - strand, within TX73_023970at 5198.707 kb on - strandat 5198.707 kb on - strandat 5198.741 kb on - strandat 5198.753 kb on + strandat 5198.759 kb on - strandat 5198.788 kb on + strandat 5198.813 kb on - strandat 5198.813 kb on - strandat 5198.818 kb on - strandat 5198.938 kb on + strand, within TX73_023975at 5198.946 kb on - strand, within TX73_023975at 5199.049 kb on - strand, within TX73_023975at 5199.158 kb on - strand, within TX73_023975at 5199.250 kb on + strand, within TX73_023975

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM with succinate
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5,196,873 - TX73_023950 0.47 -2.2
5,196,940 + TX73_023950 0.57 -0.3
5,197,017 + TX73_023950 0.68 -0.9
5,197,017 + TX73_023950 0.68 -1.8
5,197,071 + TX73_023950 0.75 -3.2
5,197,105 - TX73_023950 0.80 +0.9
5,197,106 + TX73_023950 0.80 +1.6
5,197,114 - TX73_023950 0.81 -1.9
5,197,114 - TX73_023950 0.81 -0.3
5,197,140 + TX73_023950 0.85 -2.9
5,197,143 + TX73_023950 0.85 -1.3
5,197,166 + TX73_023950 0.89 -0.0
5,197,236 + +1.0
5,197,265 - -0.3
5,197,267 - +0.8
5,197,283 + -1.0
5,197,291 - +0.1
5,197,296 - TX73_023955 0.10 -0.3
5,197,305 + TX73_023955 0.13 +0.3
5,197,305 + TX73_023955 0.13 -0.0
5,197,313 - TX73_023955 0.16 +0.9
5,197,313 - TX73_023955 0.16 -1.3
5,197,313 - TX73_023955 0.16 +1.0
5,197,313 - TX73_023955 0.16 -1.0
5,197,313 - TX73_023955 0.16 -0.1
5,197,317 + TX73_023955 0.17 -0.1
5,197,447 + TX73_023955 0.59 +0.8
5,197,455 - TX73_023955 0.61 +1.1
5,197,469 + TX73_023955 0.66 -0.9
5,197,476 + TX73_023955 0.68 -0.8
5,197,476 + TX73_023955 0.68 +0.7
5,197,484 - TX73_023955 0.71 +1.1
5,197,669 + TX73_023960 0.16 -0.3
5,197,669 - TX73_023960 0.16 +0.3
5,197,679 + TX73_023960 0.21 -0.9
5,197,679 + TX73_023960 0.21 -0.7
5,197,687 - TX73_023960 0.25 -0.5
5,197,759 - TX73_023960 0.59 +1.2
5,197,778 - TX73_023960 0.69 -1.3
5,197,859 + -1.3
5,197,874 - -0.7
5,198,039 + TX73_023965 0.38 -1.1
5,198,053 - TX73_023965 0.41 -1.5
5,198,064 + TX73_023965 0.44 -2.5
5,198,094 - TX73_023965 0.50 -1.4
5,198,113 - TX73_023965 0.54 -0.3
5,198,113 - TX73_023965 0.54 -1.9
5,198,163 - TX73_023965 0.65 -0.8
5,198,232 - TX73_023965 0.80 -1.3
5,198,232 - TX73_023965 0.80 -1.2
5,198,234 - TX73_023965 0.80 -1.4
5,198,242 + TX73_023965 0.82 -1.6
5,198,257 - TX73_023965 0.85 -1.2
5,198,266 - TX73_023965 0.87 -0.3
5,198,266 - TX73_023965 0.87 -0.5
5,198,267 - TX73_023965 0.87 -2.1
5,198,325 + -0.2
5,198,325 + +0.3
5,198,333 - -0.3
5,198,333 - -0.3
5,198,369 + TX73_023970 0.11 -0.7
5,198,372 - TX73_023970 0.11 +0.1
5,198,381 + TX73_023970 0.14 -0.4
5,198,384 - TX73_023970 0.14 +0.6
5,198,415 + TX73_023970 0.22 -0.5
5,198,415 + TX73_023970 0.22 -1.6
5,198,422 + TX73_023970 0.24 -2.6
5,198,474 + TX73_023970 0.37 -0.2
5,198,518 - TX73_023970 0.48 -0.8
5,198,525 + TX73_023970 0.50 -0.9
5,198,533 - TX73_023970 0.52 -0.4
5,198,573 + TX73_023970 0.62 -2.8
5,198,621 - TX73_023970 0.74 -2.9
5,198,707 - -0.4
5,198,707 - -1.2
5,198,741 - -0.5
5,198,753 + -0.1
5,198,759 - -0.0
5,198,788 + +0.4
5,198,813 - +0.5
5,198,813 - -0.8
5,198,818 - +0.2
5,198,938 + TX73_023975 0.11 -0.3
5,198,946 - TX73_023975 0.12 -1.5
5,199,049 - TX73_023975 0.20 -2.0
5,199,158 - TX73_023975 0.27 -2.5
5,199,250 + TX73_023975 0.34 -1.7

Or see this region's nucleotide sequence