Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_022425

Experiment: NFM with succinate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with succinate
4,876,796	+		TX73_022415	0.70	-1.9
4,876,804	-		TX73_022415	0.71	+0.5
4,876,839	-		TX73_022415	0.73	-0.9
4,876,839	-		TX73_022415	0.73	+1.0
4,876,889	-		TX73_022415	0.76	-0.3
4,876,946	+		TX73_022415	0.79	+0.3
4,876,974	-		TX73_022415	0.81	+1.0
4,877,016	-		TX73_022415	0.83	+0.4
4,877,081	+		TX73_022415	0.87	+0.4
4,877,100	+		TX73_022415	0.88	+0.7
4,877,100	+		TX73_022415	0.88	+2.3
4,877,217	+				-0.3
4,877,217	+				+0.8
4,877,225	-				+0.6
4,877,237	-				+0.8
4,877,254	-				-1.3
4,877,274	+				+1.1
4,877,278	-				-0.9
4,877,305	-				+0.8
4,877,305	-				+0.4
4,877,306	+				-2.0
4,877,326	+				+0.2
4,877,351	+				+0.1
4,877,351	-				-0.1
4,877,359	-				-0.5
4,877,395	-		TX73_022420	0.15	+0.2
4,877,430	-		TX73_022420	0.28	-0.8
4,877,435	-		TX73_022420	0.30	+0.3
4,877,450	-		TX73_022420	0.36	-0.8
4,877,469	+		TX73_022420	0.43	+0.4
4,877,485	+		TX73_022420	0.49	+0.4
4,877,498	+		TX73_022420	0.53	+0.6
4,877,522	+		TX73_022420	0.62	+0.6
4,877,522	+		TX73_022420	0.62	+0.9
4,877,523	-		TX73_022420	0.63	-0.7
4,877,554	-		TX73_022420	0.74	-0.2
4,877,572	+		TX73_022420	0.81	-0.2
4,877,575	-		TX73_022420	0.82	-1.0
4,877,585	-		TX73_022420	0.86	+0.8
4,877,666	+				+1.1
4,877,740	+				+0.2
4,877,740	+				+0.3
4,877,758	+				+0.9
4,877,758	+				-0.6
4,877,826	+				+0.6
4,877,839	+				-0.2
4,877,845	+				+0.0
4,877,847	-				-0.5
4,877,859	+				-0.5
4,877,866	+				-0.3
4,877,871	+				-0.5
4,877,940	+				-0.8
4,877,948	-				+1.2
4,877,959	+				+0.0
4,877,959	+				+0.7
4,877,965	+				-0.1
4,877,967	-				+0.5
4,877,967	-				-1.5
4,877,967	-				-0.6
4,877,976	+				-0.7
4,878,021	+		TX73_022425	0.11	-0.2
4,878,026	+		TX73_022425	0.11	-1.6
4,878,026	+		TX73_022425	0.11	-0.6
4,878,029	-		TX73_022425	0.12	-1.6
4,878,029	-		TX73_022425	0.12	-0.5
4,878,031	+		TX73_022425	0.12	-0.1
4,878,034	-		TX73_022425	0.12	+0.3
4,878,034	-		TX73_022425	0.12	+0.2
4,878,071	+		TX73_022425	0.14	-1.3
4,878,071	+		TX73_022425	0.14	-0.4
4,878,071	+		TX73_022425	0.14	+0.1
4,878,071	+		TX73_022425	0.14	-0.1
4,878,076	+		TX73_022425	0.14	+0.2
4,878,076	+		TX73_022425	0.14	-2.4
4,878,079	-		TX73_022425	0.14	-0.2
4,878,080	+		TX73_022425	0.14	-0.3
4,878,088	-		TX73_022425	0.14	-0.7
4,878,095	+		TX73_022425	0.15	+0.3
4,878,103	-		TX73_022425	0.15	-0.8
4,878,103	-		TX73_022425	0.15	-0.2
4,878,135	-		TX73_022425	0.17	+0.2
4,878,140	+		TX73_022425	0.17	+0.4
4,878,148	+		TX73_022425	0.17	+0.1
4,878,156	-		TX73_022425	0.18	-0.9
4,878,161	-		TX73_022425	0.18	-1.3
4,878,192	+		TX73_022425	0.20	+0.4
4,878,228	+		TX73_022425	0.21	-1.2
4,878,236	-		TX73_022425	0.22	-0.5
4,878,241	-		TX73_022425	0.22	-0.1
4,878,247	+		TX73_022425	0.22	+0.7
4,878,254	+		TX73_022425	0.23	-0.1
4,878,256	+		TX73_022425	0.23	-0.1
4,878,256	+		TX73_022425	0.23	+0.4
4,878,264	-		TX73_022425	0.23	-0.2
4,878,269	+		TX73_022425	0.23	+0.4
4,878,275	+		TX73_022425	0.24	-0.5
4,878,280	+		TX73_022425	0.24	-0.7
4,878,290	+		TX73_022425	0.24	-1.0
4,878,316	+		TX73_022425	0.26	+0.3
4,878,321	+		TX73_022425	0.26	+0.9
4,878,324	-		TX73_022425	0.26	-0.2
4,878,360	-		TX73_022425	0.28	-0.9
4,878,413	-		TX73_022425	0.30	-0.8
4,878,415	-		TX73_022425	0.30	-0.9
4,878,449	-		TX73_022425	0.32	-0.1
4,878,455	+		TX73_022425	0.32	-0.6
4,878,455	+		TX73_022425	0.32	+0.8
4,878,496	+		TX73_022425	0.34	-0.0
4,878,498	+		TX73_022425	0.34	+0.0
4,878,525	-		TX73_022425	0.36	-0.3
4,878,532	+		TX73_022425	0.36	-0.4
4,878,535	-		TX73_022425	0.36	-1.0
4,878,537	+		TX73_022425	0.36	-0.1
4,878,543	+		TX73_022425	0.37	+0.3
4,878,543	-		TX73_022425	0.37	-0.4
4,878,599	-		TX73_022425	0.39	+0.4
4,878,606	+		TX73_022425	0.40	-0.2
4,878,625	-		TX73_022425	0.41	-0.1
4,878,683	+		TX73_022425	0.43	+0.4
4,878,690	-		TX73_022425	0.44	+0.2
4,878,707	+		TX73_022425	0.45	+0.2
4,878,707	+		TX73_022425	0.45	-1.0
4,878,715	-		TX73_022425	0.45	-1.0
4,878,715	-		TX73_022425	0.45	+0.2
4,878,734	+		TX73_022425	0.46	+0.6
4,878,742	-		TX73_022425	0.46	-0.8
4,878,825	+		TX73_022425	0.50	-0.8
4,878,836	+		TX73_022425	0.51	-0.1
4,878,842	+		TX73_022425	0.51	+0.2
4,878,859	-		TX73_022425	0.52	-0.9
4,878,864	+		TX73_022425	0.52	+0.6
4,878,901	+		TX73_022425	0.54	-1.1
4,878,912	+		TX73_022425	0.55	-0.5
4,878,965	-		TX73_022425	0.57	-0.6
4,878,995	+		TX73_022425	0.59	+0.5
4,879,014	-		TX73_022425	0.60	-0.2
4,879,067	+		TX73_022425	0.62	+0.3
4,879,067	+		TX73_022425	0.62	-0.8
4,879,070	-		TX73_022425	0.62	+0.4
4,879,070	-		TX73_022425	0.62	+0.3
4,879,070	-		TX73_022425	0.62	-1.5
4,879,080	-		TX73_022425	0.63	-0.3
4,879,087	+		TX73_022425	0.63	+0.9
4,879,094	+		TX73_022425	0.63	+0.3
4,879,102	-		TX73_022425	0.64	-1.3
4,879,104	+		TX73_022425	0.64	-0.2
4,879,128	+		TX73_022425	0.65	+0.1
4,879,143	+		TX73_022425	0.66	+0.1
4,879,167	-		TX73_022425	0.67	-0.8
4,879,180	+		TX73_022425	0.68	-1.2
4,879,206	-		TX73_022425	0.69	-0.3
4,879,253	-		TX73_022425	0.71	-0.9
4,879,268	+		TX73_022425	0.72	-0.6
4,879,268	-		TX73_022425	0.72	-2.0
4,879,276	-		TX73_022425	0.72	+0.7
4,879,277	-		TX73_022425	0.72	+0.5
4,879,331	-		TX73_022425	0.75	-0.4
4,879,394	-		TX73_022425	0.78	-0.8
4,879,517	+		TX73_022425	0.84	-1.5
4,879,517	+		TX73_022425	0.84	+0.6
4,879,523	+		TX73_022425	0.84	+2.2
4,879,533	-		TX73_022425	0.85	-0.7
4,879,606	+		TX73_022425	0.88	-1.2
4,879,606	+		TX73_022425	0.88	+0.3
4,879,607	+		TX73_022425	0.88	-0.4
4,879,607	+		TX73_022425	0.88	+0.8
4,879,607	+		TX73_022425	0.88	+0.1
4,879,607	+		TX73_022425	0.88	-0.6
4,879,615	-		TX73_022425	0.89	+0.8
4,879,615	-		TX73_022425	0.89	-0.4
4,879,615	-		TX73_022425	0.89	+0.4
4,879,615	-		TX73_022425	0.89	-1.2
4,879,620	-		TX73_022425	0.89	+0.5
4,879,632	-		TX73_022425	0.90	+0.5
4,879,633	+		TX73_022425	0.90	+0.8
4,879,656	-				+0.4
4,879,661	-				+0.7
4,879,679	+				+0.5
4,879,679	+				+0.9
4,879,687	-				-1.7
4,879,687	-				+0.0
4,879,754	+				+0.9
4,879,787	+				+0.3
4,879,797	-				-1.4
4,879,797	-				+0.0
4,879,800	-				-0.3
4,879,823	+				+0.9
4,879,823	+				+0.4
4,879,831	-				-0.5
4,879,839	-				-0.6
4,879,908	+				+0.0
4,879,914	-				+0.5
4,879,958	+				+0.1
4,879,971	-				+0.0
4,880,009	+				-1.2
4,880,017	-				+2.5
4,880,017	-				+0.6
4,880,048	+				-0.0
4,880,078	-				-0.9
4,880,109	+		TX73_022430	0.11	-0.5
4,880,117	-		TX73_022430	0.13	+1.2
4,880,158	+		TX73_022430	0.22	+0.3
4,880,183	+		TX73_022430	0.27	+1.0
4,880,206	-		TX73_022430	0.32	+0.6
4,880,208	-		TX73_022430	0.32	+0.3
4,880,213	-		TX73_022430	0.33	-0.1
4,880,270	+		TX73_022430	0.45	+1.1
4,880,287	+		TX73_022430	0.49	-0.1
4,880,302	-		TX73_022430	0.52	-0.2
4,880,334	+		TX73_022430	0.59	-0.0
4,880,340	+		TX73_022430	0.60	+1.2
4,880,364	+		TX73_022430	0.65	-1.0
4,880,366	+		TX73_022430	0.66	-0.6
4,880,376	+		TX73_022430	0.68	+0.8
4,880,384	-		TX73_022430	0.69	-0.7
4,880,454	+		TX73_022430	0.84	-0.8
4,880,454	+		TX73_022430	0.84	+0.1
4,880,456	-		TX73_022430	0.85	-0.6
4,880,476	+		TX73_022430	0.89	+0.5
4,880,476	+		TX73_022430	0.89	-1.6
4,880,487	-				-1.1
4,880,556	-				-0.9
4,880,675	+				-0.5
4,880,719	-				+0.8
4,880,731	+				+0.5
4,880,740	-				+0.7
4,880,783	+				-0.3
4,880,791	-				+0.4
4,880,810	+		TX73_022435	0.10	+0.2