Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014995

Experiment: NFM with succinate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NFM with succinate
3,269,895	-				-0.7
3,269,910	-				+0.2
3,269,916	+				-0.9
3,269,935	+				+0.4
3,269,947	+				+0.2
3,269,963	-				-3.1
3,269,964	-				+0.4
3,269,964	-				+0.2
3,269,975	+				+0.3
3,269,976	-				-0.7
3,269,984	-				-0.8
3,269,994	-		TX73_014990	0.11	+0.0
3,270,024	-		TX73_014990	0.17	-1.6
3,270,028	-		TX73_014990	0.18	-0.7
3,270,087	-		TX73_014990	0.29	-0.2
3,270,090	-		TX73_014990	0.30	+0.0
3,270,093	+		TX73_014990	0.30	-1.3
3,270,101	-		TX73_014990	0.32	-2.2
3,270,107	-		TX73_014990	0.33	-0.8
3,270,136	+		TX73_014990	0.38	-1.0
3,270,142	-		TX73_014990	0.39	-0.4
3,270,142	-		TX73_014990	0.39	-1.4
3,270,144	-		TX73_014990	0.40	+0.4
3,270,144	-		TX73_014990	0.40	-3.8
3,270,160	+		TX73_014990	0.43	-0.9
3,270,193	-		TX73_014990	0.49	-1.6
3,270,199	+		TX73_014990	0.50	-2.2
3,270,207	-		TX73_014990	0.52	-1.2
3,270,207	-		TX73_014990	0.52	-1.4
3,270,214	-		TX73_014990	0.53	-1.1
3,270,217	+		TX73_014990	0.53	+0.3
3,270,217	+		TX73_014990	0.53	-1.3
3,270,277	-		TX73_014990	0.65	-0.6
3,270,301	-		TX73_014990	0.69	-0.0
3,270,317	+		TX73_014990	0.72	-0.2
3,270,350	+		TX73_014990	0.79	-0.7
3,270,369	-		TX73_014990	0.82	-0.8
3,270,369	-		TX73_014990	0.82	+0.1
3,270,391	-		TX73_014990	0.86	-0.7
3,270,396	+		TX73_014990	0.87	-1.1
3,270,404	-		TX73_014990	0.89	-0.1
3,270,480	+				-1.0
3,270,486	-				-0.6
3,270,530	+				-0.2
3,270,543	-				-0.3
3,270,582	+				-1.0
3,270,589	-				-0.2
3,270,596	+				-0.1
3,270,601	+				+0.3
3,270,604	-				+0.4
3,270,604	-				-0.2
3,270,604	-				+1.2
3,270,604	-				+0.6
3,270,620	+				-0.2
3,270,631	+				+0.3
3,270,631	+				-0.4
3,270,649	+				+0.3
3,270,683	+				+0.8
3,270,683	+				-0.0
3,270,683	+				+0.3
3,270,688	+				+0.4
3,270,723	+				-0.1
3,270,723	+				-0.2
3,270,769	-		TX73_014995	0.10	+0.6
3,270,769	-		TX73_014995	0.10	-0.8
3,270,788	+		TX73_014995	0.11	+0.7
3,270,863	+		TX73_014995	0.14	-0.4
3,270,893	-		TX73_014995	0.15	+0.1
3,270,904	-		TX73_014995	0.16	-0.5
3,270,927	+		TX73_014995	0.17	+0.4
3,270,927	+		TX73_014995	0.17	-0.1
3,270,935	-		TX73_014995	0.17	-0.5
3,270,935	-		TX73_014995	0.17	+0.8
3,270,980	+		TX73_014995	0.19	+0.3
3,270,987	-		TX73_014995	0.19	-0.2
3,271,021	+		TX73_014995	0.20	-0.2
3,271,021	+		TX73_014995	0.20	+0.2
3,271,021	+		TX73_014995	0.20	+0.9
3,271,029	-		TX73_014995	0.21	+0.5
3,271,029	-		TX73_014995	0.21	+0.5
3,271,062	+		TX73_014995	0.22	+1.1
3,271,067	-		TX73_014995	0.22	-0.5
3,271,075	-		TX73_014995	0.22	+0.1
3,271,108	-		TX73_014995	0.24	-0.7
3,271,114	+		TX73_014995	0.24	+0.2
3,271,115	-		TX73_014995	0.24	-0.7
3,271,191	+		TX73_014995	0.27	-0.2
3,271,191	+		TX73_014995	0.27	-0.6
3,271,199	-		TX73_014995	0.27	-0.0
3,271,212	-		TX73_014995	0.28	-0.0
3,271,237	+		TX73_014995	0.29	-0.2
3,271,240	+		TX73_014995	0.29	+0.3
3,271,254	+		TX73_014995	0.29	+0.0
3,271,262	+		TX73_014995	0.30	-1.2
3,271,262	+		TX73_014995	0.30	+0.2
3,271,265	-		TX73_014995	0.30	+0.1
3,271,267	-		TX73_014995	0.30	+0.3
3,271,280	-		TX73_014995	0.30	+0.6
3,271,294	-		TX73_014995	0.31	+0.5
3,271,330	+		TX73_014995	0.32	-2.2
3,271,340	+		TX73_014995	0.33	+0.1
3,271,348	-		TX73_014995	0.33	+0.1
3,271,350	+		TX73_014995	0.33	-0.0
3,271,361	+		TX73_014995	0.34	-0.4
3,271,369	-		TX73_014995	0.34	-0.5
3,271,401	+		TX73_014995	0.35	+0.3
3,271,409	-		TX73_014995	0.35	-1.7
3,271,431	+		TX73_014995	0.36	-0.5
3,271,431	+		TX73_014995	0.36	+0.0
3,271,446	+		TX73_014995	0.37	+0.4
3,271,449	+		TX73_014995	0.37	+0.1
3,271,449	+		TX73_014995	0.37	-1.0
3,271,463	-		TX73_014995	0.38	-0.4
3,271,466	+		TX73_014995	0.38	+0.4
3,271,517	-		TX73_014995	0.40	-0.0
3,271,524	-		TX73_014995	0.40	+0.6
3,271,537	-		TX73_014995	0.40	+0.8
3,271,577	+		TX73_014995	0.42	+1.2
3,271,582	+		TX73_014995	0.42	-1.0
3,271,585	-		TX73_014995	0.42	+0.8
3,271,616	-		TX73_014995	0.44	+0.4
3,271,625	+		TX73_014995	0.44	+0.8
3,271,632	+		TX73_014995	0.44	+0.7
3,271,651	+		TX73_014995	0.45	-0.3
3,271,659	-		TX73_014995	0.45	+0.1
3,271,689	+		TX73_014995	0.46	-0.4
3,271,692	-		TX73_014995	0.47	-0.3
3,271,696	+		TX73_014995	0.47	-0.4
3,271,696	+		TX73_014995	0.47	-0.1
3,271,696	+		TX73_014995	0.47	+0.1
3,271,696	+		TX73_014995	0.47	-0.2
3,271,696	+		TX73_014995	0.47	+1.0
3,271,696	+		TX73_014995	0.47	+0.7
3,271,696	+		TX73_014995	0.47	-0.5
3,271,696	+		TX73_014995	0.47	+0.4
3,271,696	+		TX73_014995	0.47	+0.2
3,271,696	+		TX73_014995	0.47	+0.2
3,271,696	+		TX73_014995	0.47	-1.2
3,271,696	+		TX73_014995	0.47	-0.2
3,271,696	+		TX73_014995	0.47	-0.8
3,271,696	+		TX73_014995	0.47	-0.4
3,271,696	+		TX73_014995	0.47	+0.9
3,271,696	+		TX73_014995	0.47	+0.6
3,271,696	+		TX73_014995	0.47	-0.1
3,271,701	+		TX73_014995	0.47	+0.9
3,271,704	-		TX73_014995	0.47	+1.1
3,271,704	-		TX73_014995	0.47	+0.4
3,271,704	-		TX73_014995	0.47	-0.4
3,271,704	-		TX73_014995	0.47	-0.6
3,271,704	-		TX73_014995	0.47	-0.7
3,271,704	-		TX73_014995	0.47	-1.0
3,271,704	-		TX73_014995	0.47	-0.5
3,271,704	-		TX73_014995	0.47	-0.1
3,271,704	-		TX73_014995	0.47	+0.5
3,271,704	-		TX73_014995	0.47	-0.5
3,271,704	-		TX73_014995	0.47	-1.1
3,271,704	-		TX73_014995	0.47	+0.5
3,271,704	-		TX73_014995	0.47	+0.3
3,271,704	-		TX73_014995	0.47	+0.4
3,271,708	+		TX73_014995	0.47	-1.2
3,271,733	+		TX73_014995	0.48	-0.4
3,271,741	-		TX73_014995	0.48	-0.1
3,271,741	-		TX73_014995	0.48	+1.2
3,271,799	-		TX73_014995	0.51	+0.5
3,271,849	-		TX73_014995	0.53	-0.2
3,271,919	-		TX73_014995	0.55	-1.0
3,271,922	+		TX73_014995	0.56	-0.5
3,271,937	-		TX73_014995	0.56	+0.5
3,271,962	-		TX73_014995	0.57	-0.3
3,271,972	-		TX73_014995	0.57	-0.2
3,271,972	-		TX73_014995	0.57	-1.3
3,271,985	-		TX73_014995	0.58	+0.3
3,272,025	+		TX73_014995	0.60	+0.1
3,272,033	-		TX73_014995	0.60	-0.3
3,272,050	+		TX73_014995	0.61	+0.5
3,272,127	-		TX73_014995	0.64	+0.3
3,272,139	+		TX73_014995	0.64	+0.0
3,272,146	+		TX73_014995	0.64	+0.1
3,272,176	-		TX73_014995	0.65	-1.8
3,272,276	-		TX73_014995	0.69	+0.2
3,272,279	-		TX73_014995	0.69	-1.5
3,272,329	+		TX73_014995	0.71	+1.0
3,272,333	-		TX73_014995	0.72	+1.1
3,272,337	-		TX73_014995	0.72	+0.1
3,272,364	+		TX73_014995	0.73	+0.6
3,272,403	-		TX73_014995	0.74	-0.2
3,272,427	+		TX73_014995	0.75	+0.5
3,272,432	+		TX73_014995	0.75	-1.6
3,272,445	+		TX73_014995	0.76	+0.2
3,272,501	-		TX73_014995	0.78	+1.2
3,272,524	+		TX73_014995	0.79	-0.2
3,272,527	-		TX73_014995	0.79	+0.2
3,272,567	-		TX73_014995	0.81	+1.0
3,272,594	-		TX73_014995	0.82	-0.1
3,272,643	+		TX73_014995	0.84	+0.2
3,272,645	+		TX73_014995	0.84	+0.3
3,272,676	+		TX73_014995	0.85	+1.0
3,272,692	-		TX73_014995	0.86	-0.4
3,272,732	-		TX73_014995	0.87	+0.5
3,272,732	-		TX73_014995	0.87	+1.6
3,272,747	-		TX73_014995	0.88	-0.2
3,272,791	+		TX73_014995	0.89	+0.4
3,272,801	+		TX73_014995	0.90	-0.1
3,272,852	+				-0.0
3,272,860	-				-1.2
3,272,860	-				-0.9
3,272,876	+				+0.3
3,272,913	+				-0.3
3,272,925	-				+0.0
3,272,939	-				+0.5
3,272,965	+				-0.1
3,272,973	-				+0.5
3,273,004	+				+0.1
3,273,012	+				-0.5
3,273,025	-				+0.6
3,273,105	+				+1.2
3,273,173	-				+0.6
3,273,173	-				+0.0
3,273,245	+				-1.6
3,273,323	+		TX73_015000	0.19	+0.5
3,273,331	-		TX73_015000	0.20	+0.7
3,273,337	+		TX73_015000	0.21	-0.0
3,273,342	-		TX73_015000	0.21	+0.1
3,273,402	+		TX73_015000	0.30	+0.8
3,273,446	+		TX73_015000	0.36	+0.1
3,273,525	-		TX73_015000	0.47	+0.9
3,273,525	-		TX73_015000	0.47	+0.2
3,273,539	+		TX73_015000	0.49	-0.3
3,273,549	+		TX73_015000	0.50	+0.3
3,273,549	+		TX73_015000	0.50	+0.2
3,273,564	+		TX73_015000	0.52	+0.8
3,273,607	-		TX73_015000	0.58	+0.2
3,273,701	+		TX73_015000	0.71	+0.6
3,273,773	+		TX73_015000	0.81	-1.0
3,273,831	-		TX73_015000	0.89	-1.1
3,273,831	-		TX73_015000	0.89	+0.2
3,273,882	-				+1.1
3,273,908	-				+0.3
3,273,923	-				-0.6
3,273,960	-		TX73_015005	0.12	-0.2
3,273,976	-		TX73_015005	0.15	-1.2
3,273,988	-		TX73_015005	0.17	+0.5
3,274,053	+		TX73_015005	0.30	+0.2
3,274,053	-		TX73_015005	0.30	+0.2