Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002460

Experiment: NFM with succinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002455 and TX73_002460 are separated by 91 nucleotidesTX73_002460 and TX73_002465 are separated by 66 nucleotidesTX73_002465 and TX73_002470 are separated by 210 nucleotides TX73_002455: TX73_002455 - hypothetical protein, at 524,517 to 525,467 _002455 TX73_002460: TX73_002460 - NADP-dependent oxidoreductase, at 525,559 to 526,560 _002460 TX73_002465: TX73_002465 - tRNA-Arg, at 526,627 to 526,703 _002465 TX73_002470: TX73_002470 - pilus assembly protein, at 526,914 to 528,245 _002470 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1 2 3at 525.193 kb on - strand, within TX73_002455at 525.422 kb on - strandat 525.428 kb on - strandat 525.455 kb on - strandat 525.462 kb on + strandat 525.470 kb on - strandat 525.474 kb on + strandat 525.548 kb on + strandat 525.555 kb on + strandat 525.555 kb on + strandat 525.686 kb on - strand, within TX73_002460at 525.689 kb on + strand, within TX73_002460at 525.782 kb on - strand, within TX73_002460at 525.800 kb on + strand, within TX73_002460at 525.828 kb on - strand, within TX73_002460at 525.866 kb on - strand, within TX73_002460at 525.871 kb on - strand, within TX73_002460at 525.897 kb on + strand, within TX73_002460at 525.905 kb on - strand, within TX73_002460at 525.905 kb on - strand, within TX73_002460at 525.931 kb on + strand, within TX73_002460at 526.067 kb on - strand, within TX73_002460at 526.134 kb on + strand, within TX73_002460at 526.167 kb on + strand, within TX73_002460at 526.174 kb on + strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.175 kb on - strand, within TX73_002460at 526.184 kb on + strand, within TX73_002460at 526.207 kb on - strand, within TX73_002460at 526.237 kb on + strand, within TX73_002460at 526.261 kb on + strand, within TX73_002460at 526.315 kb on + strand, within TX73_002460at 526.315 kb on + strand, within TX73_002460at 526.323 kb on - strand, within TX73_002460at 526.364 kb on + strand, within TX73_002460at 526.377 kb on + strand, within TX73_002460at 526.395 kb on + strand, within TX73_002460at 526.397 kb on + strand, within TX73_002460at 526.400 kb on - strand, within TX73_002460at 526.405 kb on - strand, within TX73_002460at 526.429 kb on + strand, within TX73_002460at 526.462 kb on + strandat 526.463 kb on - strandat 526.470 kb on - strandat 526.488 kb on + strandat 526.488 kb on + strandat 526.548 kb on + strandat 526.554 kb on + strandat 526.562 kb on - strandat 526.562 kb on - strandat 526.563 kb on - strandat 526.568 kb on - strandat 526.595 kb on - strandat 526.626 kb on - strandat 526.714 kb on + strandat 526.714 kb on + strandat 526.724 kb on + strandat 526.729 kb on - strandat 526.737 kb on + strandat 526.737 kb on + strandat 526.737 kb on + strandat 526.738 kb on + strandat 526.738 kb on + strandat 526.745 kb on - strandat 526.789 kb on + strandat 526.827 kb on - strandat 526.858 kb on - strandat 526.903 kb on - strandat 526.905 kb on + strandat 526.913 kb on - strandat 526.968 kb on + strandat 527.022 kb on - strandat 527.036 kb on + strandat 527.056 kb on - strand, within TX73_002470at 527.079 kb on + strand, within TX73_002470at 527.087 kb on - strand, within TX73_002470at 527.106 kb on + strand, within TX73_002470at 527.128 kb on + strand, within TX73_002470at 527.128 kb on + strand, within TX73_002470at 527.201 kb on - strand, within TX73_002470at 527.225 kb on - strand, within TX73_002470at 527.249 kb on + strand, within TX73_002470at 527.251 kb on - strand, within TX73_002470at 527.266 kb on + strand, within TX73_002470at 527.286 kb on + strand, within TX73_002470at 527.294 kb on - strand, within TX73_002470at 527.294 kb on - strand, within TX73_002470at 527.425 kb on + strand, within TX73_002470at 527.425 kb on + strand, within TX73_002470at 527.474 kb on + strand, within TX73_002470

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM with succinate
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525,193 - TX73_002455 0.71 -1.1
525,422 - +1.5
525,428 - +1.1
525,455 - +0.0
525,462 + -0.2
525,470 - +0.8
525,474 + +1.5
525,548 + -0.8
525,555 + +0.5
525,555 + +0.1
525,686 - TX73_002460 0.13 +0.2
525,689 + TX73_002460 0.13 -0.9
525,782 - TX73_002460 0.22 +0.7
525,800 + TX73_002460 0.24 +0.1
525,828 - TX73_002460 0.27 +1.8
525,866 - TX73_002460 0.31 +0.8
525,871 - TX73_002460 0.31 +0.9
525,897 + TX73_002460 0.34 +0.7
525,905 - TX73_002460 0.35 +0.8
525,905 - TX73_002460 0.35 -0.0
525,931 + TX73_002460 0.37 -0.2
526,067 - TX73_002460 0.51 -0.0
526,134 + TX73_002460 0.57 -0.2
526,167 + TX73_002460 0.61 -0.4
526,174 + TX73_002460 0.61 -0.3
526,175 - TX73_002460 0.61 +0.8
526,175 - TX73_002460 0.61 +0.6
526,175 - TX73_002460 0.61 +0.4
526,175 - TX73_002460 0.61 +0.1
526,184 + TX73_002460 0.62 -0.1
526,207 - TX73_002460 0.65 +0.1
526,237 + TX73_002460 0.68 +1.9
526,261 + TX73_002460 0.70 +0.0
526,315 + TX73_002460 0.75 -0.0
526,315 + TX73_002460 0.75 -0.1
526,323 - TX73_002460 0.76 -0.1
526,364 + TX73_002460 0.80 +0.7
526,377 + TX73_002460 0.82 +0.1
526,395 + TX73_002460 0.83 +0.8
526,397 + TX73_002460 0.84 +0.6
526,400 - TX73_002460 0.84 -1.0
526,405 - TX73_002460 0.84 +1.3
526,429 + TX73_002460 0.87 +0.9
526,462 + +0.2
526,463 - +0.7
526,470 - -0.1
526,488 + +1.0
526,488 + +0.7
526,548 + +0.0
526,554 + -0.2
526,562 - +0.1
526,562 - +0.1
526,563 - +1.0
526,568 - +0.9
526,595 - -1.9
526,626 - -0.4
526,714 + +1.6
526,714 + -0.9
526,724 + +1.4
526,729 - -0.3
526,737 + +0.1
526,737 + -0.6
526,737 + +0.2
526,738 + +0.1
526,738 + +0.1
526,745 - +0.0
526,789 + -0.3
526,827 - +0.4
526,858 - -0.8
526,903 - +0.6
526,905 + -0.1
526,913 - +0.0
526,968 + -0.1
527,022 - +0.9
527,036 + -0.6
527,056 - TX73_002470 0.11 -1.4
527,079 + TX73_002470 0.12 -0.4
527,087 - TX73_002470 0.13 +2.8
527,106 + TX73_002470 0.14 -0.0
527,128 + TX73_002470 0.16 +0.1
527,128 + TX73_002470 0.16 -0.4
527,201 - TX73_002470 0.22 +0.1
527,225 - TX73_002470 0.23 +0.3
527,249 + TX73_002470 0.25 -0.1
527,251 - TX73_002470 0.25 +0.7
527,266 + TX73_002470 0.26 +0.5
527,286 + TX73_002470 0.28 -0.5
527,294 - TX73_002470 0.29 -0.4
527,294 - TX73_002470 0.29 -0.7
527,425 + TX73_002470 0.38 -1.0
527,425 + TX73_002470 0.38 -0.7
527,474 + TX73_002470 0.42 +0.5

Or see this region's nucleotide sequence