Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024475

Experiment: NFM_No_Mo with acetate trihydrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024465 and TX73_024470 are separated by 188 nucleotidesTX73_024470 and TX73_024475 are separated by 123 nucleotidesTX73_024475 and TX73_024480 are separated by 53 nucleotides TX73_024465: TX73_024465 - thioesterase family protein, at 5,310,697 to 5,311,470 _024465 TX73_024470: TX73_024470 - hypothetical protein, at 5,311,659 to 5,311,913 _024470 TX73_024475: TX73_024475 - hypothetical protein, at 5,312,037 to 5,312,765 _024475 TX73_024480: TX73_024480 - tetratricopeptide repeat protein, at 5,312,819 to 5,314,567 _024480 Position (kb) 5312 5313Strain fitness (log2 ratio) -2 -1 0 1 2at 5311.071 kb on - strand, within TX73_024465at 5311.078 kb on + strand, within TX73_024465at 5311.093 kb on - strand, within TX73_024465at 5311.163 kb on - strand, within TX73_024465at 5311.171 kb on + strand, within TX73_024465at 5311.184 kb on - strand, within TX73_024465at 5311.214 kb on - strand, within TX73_024465at 5311.229 kb on + strand, within TX73_024465at 5311.293 kb on - strand, within TX73_024465at 5311.293 kb on - strand, within TX73_024465at 5311.296 kb on + strand, within TX73_024465at 5311.299 kb on - strand, within TX73_024465at 5311.361 kb on - strand, within TX73_024465at 5311.385 kb on + strand, within TX73_024465at 5311.449 kb on - strandat 5311.449 kb on - strandat 5311.449 kb on - strandat 5311.464 kb on + strandat 5311.472 kb on - strandat 5311.472 kb on - strandat 5311.474 kb on + strandat 5311.482 kb on - strandat 5311.483 kb on + strandat 5311.574 kb on + strandat 5311.574 kb on + strandat 5311.574 kb on + strandat 5311.612 kb on - strandat 5311.631 kb on + strandat 5311.631 kb on + strandat 5311.634 kb on + strandat 5311.732 kb on - strand, within TX73_024470at 5311.737 kb on - strand, within TX73_024470at 5311.739 kb on + strand, within TX73_024470at 5311.747 kb on - strand, within TX73_024470at 5311.873 kb on + strand, within TX73_024470at 5311.873 kb on + strand, within TX73_024470at 5311.881 kb on - strand, within TX73_024470at 5311.881 kb on - strand, within TX73_024470at 5311.881 kb on - strand, within TX73_024470at 5311.881 kb on - strand, within TX73_024470at 5311.881 kb on - strand, within TX73_024470at 5312.034 kb on + strandat 5312.061 kb on + strandat 5312.066 kb on + strandat 5312.078 kb on + strandat 5312.080 kb on + strandat 5312.084 kb on - strandat 5312.086 kb on - strandat 5312.102 kb on - strandat 5312.143 kb on + strand, within TX73_024475at 5312.203 kb on - strand, within TX73_024475at 5312.221 kb on + strand, within TX73_024475at 5312.228 kb on + strand, within TX73_024475at 5312.238 kb on + strand, within TX73_024475at 5312.239 kb on + strand, within TX73_024475at 5312.247 kb on - strand, within TX73_024475at 5312.297 kb on + strand, within TX73_024475at 5312.387 kb on + strand, within TX73_024475at 5312.395 kb on - strand, within TX73_024475at 5312.428 kb on - strand, within TX73_024475at 5312.430 kb on - strand, within TX73_024475at 5312.447 kb on + strand, within TX73_024475at 5312.455 kb on - strand, within TX73_024475at 5312.498 kb on + strand, within TX73_024475at 5312.498 kb on + strand, within TX73_024475at 5312.498 kb on + strand, within TX73_024475at 5312.498 kb on + strand, within TX73_024475at 5312.498 kb on + strand, within TX73_024475at 5312.498 kb on + strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.506 kb on - strand, within TX73_024475at 5312.575 kb on + strand, within TX73_024475at 5312.636 kb on - strand, within TX73_024475at 5312.652 kb on - strand, within TX73_024475at 5312.714 kb on + strandat 5312.759 kb on + strandat 5312.767 kb on - strandat 5312.770 kb on + strandat 5312.801 kb on + strandat 5312.877 kb on + strandat 5312.886 kb on - strandat 5312.904 kb on + strandat 5312.909 kb on + strandat 5312.912 kb on - strandat 5312.995 kb on - strand, within TX73_024480at 5312.997 kb on + strand, within TX73_024480at 5313.024 kb on + strand, within TX73_024480at 5313.058 kb on - strand, within TX73_024480at 5313.058 kb on - strand, within TX73_024480at 5313.086 kb on - strand, within TX73_024480at 5313.105 kb on - strand, within TX73_024480at 5313.108 kb on + strand, within TX73_024480at 5313.128 kb on - strand, within TX73_024480at 5313.156 kb on + strand, within TX73_024480at 5313.168 kb on + strand, within TX73_024480at 5313.189 kb on + strand, within TX73_024480at 5313.197 kb on - strand, within TX73_024480at 5313.197 kb on - strand, within TX73_024480at 5313.240 kb on + strand, within TX73_024480at 5313.271 kb on - strand, within TX73_024480at 5313.274 kb on + strand, within TX73_024480at 5313.274 kb on + strand, within TX73_024480at 5313.276 kb on - strand, within TX73_024480at 5313.282 kb on - strand, within TX73_024480at 5313.282 kb on - strand, within TX73_024480at 5313.299 kb on - strand, within TX73_024480at 5313.317 kb on - strand, within TX73_024480at 5313.328 kb on + strand, within TX73_024480at 5313.366 kb on - strand, within TX73_024480at 5313.380 kb on + strand, within TX73_024480at 5313.380 kb on + strand, within TX73_024480at 5313.383 kb on - strand, within TX73_024480at 5313.414 kb on + strand, within TX73_024480at 5313.422 kb on - strand, within TX73_024480at 5313.448 kb on + strand, within TX73_024480at 5313.449 kb on + strand, within TX73_024480at 5313.451 kb on - strand, within TX73_024480at 5313.466 kb on + strand, within TX73_024480at 5313.466 kb on - strand, within TX73_024480at 5313.479 kb on + strand, within TX73_024480at 5313.479 kb on + strand, within TX73_024480at 5313.482 kb on - strand, within TX73_024480at 5313.487 kb on - strand, within TX73_024480at 5313.487 kb on - strand, within TX73_024480at 5313.494 kb on - strand, within TX73_024480at 5313.496 kb on + strand, within TX73_024480at 5313.496 kb on + strand, within TX73_024480at 5313.497 kb on + strand, within TX73_024480at 5313.504 kb on - strand, within TX73_024480at 5313.505 kb on - strand, within TX73_024480at 5313.517 kb on - strand, within TX73_024480at 5313.535 kb on + strand, within TX73_024480at 5313.542 kb on + strand, within TX73_024480at 5313.574 kb on - strand, within TX73_024480at 5313.585 kb on + strand, within TX73_024480at 5313.585 kb on + strand, within TX73_024480at 5313.593 kb on - strand, within TX73_024480at 5313.617 kb on - strand, within TX73_024480at 5313.695 kb on + strand, within TX73_024480at 5313.739 kb on + strand, within TX73_024480at 5313.758 kb on + strand, within TX73_024480

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM_No_Mo with acetate trihydrate
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5,311,071 - TX73_024465 0.48 -0.1
5,311,078 + TX73_024465 0.49 -0.2
5,311,093 - TX73_024465 0.51 -0.5
5,311,163 - TX73_024465 0.60 -0.6
5,311,171 + TX73_024465 0.61 -0.1
5,311,184 - TX73_024465 0.63 -0.0
5,311,214 - TX73_024465 0.67 +1.0
5,311,229 + TX73_024465 0.69 -0.5
5,311,293 - TX73_024465 0.77 +1.2
5,311,293 - TX73_024465 0.77 +0.3
5,311,296 + TX73_024465 0.77 +0.4
5,311,299 - TX73_024465 0.78 -0.4
5,311,361 - TX73_024465 0.86 +1.6
5,311,385 + TX73_024465 0.89 +0.2
5,311,449 - -0.3
5,311,449 - +0.3
5,311,449 - +0.5
5,311,464 + +0.4
5,311,472 - -0.3
5,311,472 - -2.5
5,311,474 + -0.3
5,311,482 - -0.6
5,311,483 + -0.3
5,311,574 + +0.3
5,311,574 + +0.6
5,311,574 + +0.6
5,311,612 - +1.1
5,311,631 + -1.1
5,311,631 + +0.1
5,311,634 + -1.9
5,311,732 - TX73_024470 0.29 -0.0
5,311,737 - TX73_024470 0.31 -0.3
5,311,739 + TX73_024470 0.31 +0.5
5,311,747 - TX73_024470 0.35 +0.2
5,311,873 + TX73_024470 0.84 -0.4
5,311,873 + TX73_024470 0.84 -0.8
5,311,881 - TX73_024470 0.87 +0.0
5,311,881 - TX73_024470 0.87 +0.6
5,311,881 - TX73_024470 0.87 +1.8
5,311,881 - TX73_024470 0.87 -0.1
5,311,881 - TX73_024470 0.87 -0.4
5,312,034 + +0.7
5,312,061 + +0.1
5,312,066 + +0.7
5,312,078 + -1.2
5,312,080 + -0.8
5,312,084 - +0.2
5,312,086 - -0.0
5,312,102 - -0.1
5,312,143 + TX73_024475 0.15 -0.9
5,312,203 - TX73_024475 0.23 -0.2
5,312,221 + TX73_024475 0.25 -0.4
5,312,228 + TX73_024475 0.26 +0.8
5,312,238 + TX73_024475 0.28 -0.1
5,312,239 + TX73_024475 0.28 +0.3
5,312,247 - TX73_024475 0.29 -0.3
5,312,297 + TX73_024475 0.36 +0.5
5,312,387 + TX73_024475 0.48 +0.2
5,312,395 - TX73_024475 0.49 +0.5
5,312,428 - TX73_024475 0.54 -0.4
5,312,430 - TX73_024475 0.54 +0.1
5,312,447 + TX73_024475 0.56 -0.4
5,312,455 - TX73_024475 0.57 -0.3
5,312,498 + TX73_024475 0.63 -1.0
5,312,498 + TX73_024475 0.63 +1.1
5,312,498 + TX73_024475 0.63 -0.3
5,312,498 + TX73_024475 0.63 -0.1
5,312,498 + TX73_024475 0.63 +0.5
5,312,498 + TX73_024475 0.63 -1.0
5,312,506 - TX73_024475 0.64 +0.4
5,312,506 - TX73_024475 0.64 -0.6
5,312,506 - TX73_024475 0.64 -0.5
5,312,506 - TX73_024475 0.64 -0.4
5,312,506 - TX73_024475 0.64 -0.5
5,312,506 - TX73_024475 0.64 +1.2
5,312,506 - TX73_024475 0.64 +0.2
5,312,506 - TX73_024475 0.64 +0.0
5,312,575 + TX73_024475 0.74 +1.1
5,312,636 - TX73_024475 0.82 -0.1
5,312,652 - TX73_024475 0.84 +0.2
5,312,714 + -0.3
5,312,759 + -0.5
5,312,767 - -1.4
5,312,770 + -0.8
5,312,801 + -0.7
5,312,877 + -0.1
5,312,886 - -1.6
5,312,904 + +1.3
5,312,909 + -0.6
5,312,912 - +0.1
5,312,995 - TX73_024480 0.10 -1.5
5,312,997 + TX73_024480 0.10 +0.8
5,313,024 + TX73_024480 0.12 -0.7
5,313,058 - TX73_024480 0.14 -0.3
5,313,058 - TX73_024480 0.14 +0.2
5,313,086 - TX73_024480 0.15 -0.5
5,313,105 - TX73_024480 0.16 -1.5
5,313,108 + TX73_024480 0.17 +0.3
5,313,128 - TX73_024480 0.18 +0.1
5,313,156 + TX73_024480 0.19 -0.8
5,313,168 + TX73_024480 0.20 +0.1
5,313,189 + TX73_024480 0.21 -0.4
5,313,197 - TX73_024480 0.22 -0.1
5,313,197 - TX73_024480 0.22 -0.2
5,313,240 + TX73_024480 0.24 +0.4
5,313,271 - TX73_024480 0.26 +0.3
5,313,274 + TX73_024480 0.26 +1.0
5,313,274 + TX73_024480 0.26 +0.2
5,313,276 - TX73_024480 0.26 -0.0
5,313,282 - TX73_024480 0.26 -1.2
5,313,282 - TX73_024480 0.26 -0.1
5,313,299 - TX73_024480 0.27 -1.6
5,313,317 - TX73_024480 0.28 +0.4
5,313,328 + TX73_024480 0.29 -1.0
5,313,366 - TX73_024480 0.31 -1.1
5,313,380 + TX73_024480 0.32 -1.1
5,313,380 + TX73_024480 0.32 +0.1
5,313,383 - TX73_024480 0.32 -0.4
5,313,414 + TX73_024480 0.34 -0.4
5,313,422 - TX73_024480 0.34 -1.8
5,313,448 + TX73_024480 0.36 +1.1
5,313,449 + TX73_024480 0.36 -1.2
5,313,451 - TX73_024480 0.36 -0.3
5,313,466 + TX73_024480 0.37 +0.9
5,313,466 - TX73_024480 0.37 +0.0
5,313,479 + TX73_024480 0.38 +0.7
5,313,479 + TX73_024480 0.38 -0.2
5,313,482 - TX73_024480 0.38 -0.2
5,313,487 - TX73_024480 0.38 -0.2
5,313,487 - TX73_024480 0.38 +0.4
5,313,494 - TX73_024480 0.39 +0.1
5,313,496 + TX73_024480 0.39 +0.7
5,313,496 + TX73_024480 0.39 -0.0
5,313,497 + TX73_024480 0.39 +0.3
5,313,504 - TX73_024480 0.39 +0.1
5,313,505 - TX73_024480 0.39 +0.6
5,313,517 - TX73_024480 0.40 -0.3
5,313,535 + TX73_024480 0.41 +0.5
5,313,542 + TX73_024480 0.41 -2.0
5,313,574 - TX73_024480 0.43 +0.2
5,313,585 + TX73_024480 0.44 -1.7
5,313,585 + TX73_024480 0.44 +0.5
5,313,593 - TX73_024480 0.44 -1.1
5,313,617 - TX73_024480 0.46 +0.3
5,313,695 + TX73_024480 0.50 -0.2
5,313,739 + TX73_024480 0.53 +0.8
5,313,758 + TX73_024480 0.54 -0.8

Or see this region's nucleotide sequence