Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000705

Experiment: NFM_No_Mo with acetate trihydrate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_000700 and TX73_000705 are separated by 4 nucleotidesTX73_000705 and TX73_000710 are separated by 20 nucleotides TX73_000700: TX73_000700 - chemotaxis protein, at 154,100 to 155,809 _000700 TX73_000705: TX73_000705 - chemotaxis response regulator protein-glutamate methylesterase, at 155,814 to 156,905 _000705 TX73_000710: TX73_000710 - methyltransferase domain-containing protein, at 156,926 to 157,768 _000710 Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1at 154.820 kb on + strand, within TX73_000700at 154.841 kb on + strand, within TX73_000700at 154.851 kb on + strand, within TX73_000700at 154.859 kb on + strand, within TX73_000700at 154.868 kb on + strand, within TX73_000700at 154.876 kb on - strand, within TX73_000700at 154.979 kb on - strand, within TX73_000700at 154.979 kb on - strand, within TX73_000700at 155.072 kb on + strand, within TX73_000700at 155.072 kb on + strand, within TX73_000700at 155.085 kb on - strand, within TX73_000700at 155.087 kb on + strand, within TX73_000700at 155.090 kb on - strand, within TX73_000700at 155.095 kb on - strand, within TX73_000700at 155.142 kb on + strand, within TX73_000700at 155.277 kb on - strand, within TX73_000700at 155.336 kb on + strand, within TX73_000700at 155.362 kb on - strand, within TX73_000700at 155.369 kb on + strand, within TX73_000700at 155.374 kb on - strand, within TX73_000700at 155.376 kb on + strand, within TX73_000700at 155.376 kb on + strand, within TX73_000700at 155.384 kb on - strand, within TX73_000700at 155.490 kb on + strand, within TX73_000700at 155.498 kb on - strand, within TX73_000700at 155.510 kb on - strand, within TX73_000700at 155.545 kb on + strand, within TX73_000700at 155.588 kb on + strand, within TX73_000700at 155.596 kb on - strand, within TX73_000700at 155.628 kb on + strand, within TX73_000700at 155.634 kb on + strand, within TX73_000700at 155.636 kb on - strand, within TX73_000700at 155.648 kb on - strandat 155.658 kb on - strandat 155.696 kb on + strandat 155.763 kb on - strandat 155.802 kb on - strandat 155.867 kb on + strandat 155.869 kb on + strandat 155.875 kb on - strandat 155.897 kb on - strandat 155.964 kb on + strand, within TX73_000705at 155.964 kb on + strand, within TX73_000705at 155.964 kb on + strand, within TX73_000705at 155.972 kb on - strand, within TX73_000705at 155.972 kb on - strand, within TX73_000705at 155.977 kb on + strand, within TX73_000705at 156.009 kb on + strand, within TX73_000705at 156.017 kb on - strand, within TX73_000705at 156.187 kb on + strand, within TX73_000705at 156.195 kb on - strand, within TX73_000705at 156.195 kb on - strand, within TX73_000705at 156.219 kb on + strand, within TX73_000705at 156.253 kb on + strand, within TX73_000705at 156.253 kb on + strand, within TX73_000705at 156.261 kb on - strand, within TX73_000705at 156.261 kb on - strand, within TX73_000705at 156.261 kb on - strand, within TX73_000705at 156.297 kb on + strand, within TX73_000705at 156.365 kb on - strand, within TX73_000705at 156.398 kb on + strand, within TX73_000705at 156.398 kb on + strand, within TX73_000705at 156.403 kb on + strand, within TX73_000705at 156.411 kb on - strand, within TX73_000705at 156.523 kb on + strand, within TX73_000705at 156.541 kb on - strand, within TX73_000705at 156.554 kb on - strand, within TX73_000705at 156.621 kb on + strand, within TX73_000705at 156.626 kb on + strand, within TX73_000705at 156.629 kb on - strand, within TX73_000705at 156.633 kb on + strand, within TX73_000705at 156.634 kb on - strand, within TX73_000705at 156.634 kb on - strand, within TX73_000705at 156.665 kb on - strand, within TX73_000705at 156.665 kb on - strand, within TX73_000705at 156.740 kb on + strand, within TX73_000705at 156.760 kb on + strand, within TX73_000705at 156.799 kb on + strandat 156.833 kb on + strandat 156.891 kb on - strandat 156.892 kb on - strandat 156.911 kb on - strandat 156.913 kb on + strandat 156.939 kb on - strandat 156.960 kb on + strandat 157.050 kb on + strand, within TX73_000710at 157.060 kb on + strand, within TX73_000710at 157.128 kb on - strand, within TX73_000710at 157.158 kb on + strand, within TX73_000710at 157.188 kb on + strand, within TX73_000710at 157.188 kb on + strand, within TX73_000710at 157.303 kb on + strand, within TX73_000710at 157.363 kb on + strand, within TX73_000710at 157.378 kb on - strand, within TX73_000710at 157.389 kb on + strand, within TX73_000710at 157.397 kb on - strand, within TX73_000710at 157.404 kb on - strand, within TX73_000710at 157.422 kb on + strand, within TX73_000710at 157.429 kb on + strand, within TX73_000710at 157.430 kb on - strand, within TX73_000710at 157.437 kb on - strand, within TX73_000710at 157.451 kb on + strand, within TX73_000710at 157.477 kb on - strand, within TX73_000710at 157.477 kb on - strand, within TX73_000710at 157.550 kb on + strand, within TX73_000710at 157.576 kb on + strand, within TX73_000710at 157.687 kb on + strandat 157.712 kb on + strandat 157.870 kb on + strandat 157.870 kb on + strandat 157.893 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NFM_No_Mo with acetate trihydrate
remove
154,820 + TX73_000700 0.42 +0.5
154,841 + TX73_000700 0.43 +0.7
154,851 + TX73_000700 0.44 -1.4
154,859 + TX73_000700 0.44 -0.1
154,868 + TX73_000700 0.45 +0.4
154,876 - TX73_000700 0.45 +0.8
154,979 - TX73_000700 0.51 -3.5
154,979 - TX73_000700 0.51 -1.1
155,072 + TX73_000700 0.57 +1.4
155,072 + TX73_000700 0.57 -0.7
155,085 - TX73_000700 0.58 -0.4
155,087 + TX73_000700 0.58 -0.1
155,090 - TX73_000700 0.58 +0.4
155,095 - TX73_000700 0.58 +0.4
155,142 + TX73_000700 0.61 -0.5
155,277 - TX73_000700 0.69 -0.0
155,336 + TX73_000700 0.72 -0.3
155,362 - TX73_000700 0.74 +0.2
155,369 + TX73_000700 0.74 -0.3
155,374 - TX73_000700 0.75 -0.5
155,376 + TX73_000700 0.75 +0.1
155,376 + TX73_000700 0.75 -0.4
155,384 - TX73_000700 0.75 +0.4
155,490 + TX73_000700 0.81 -0.0
155,498 - TX73_000700 0.82 +0.2
155,510 - TX73_000700 0.82 -0.4
155,545 + TX73_000700 0.85 -0.4
155,588 + TX73_000700 0.87 +0.0
155,596 - TX73_000700 0.87 -0.0
155,628 + TX73_000700 0.89 +0.2
155,634 + TX73_000700 0.90 +0.7
155,636 - TX73_000700 0.90 -2.0
155,648 - +0.5
155,658 - +0.1
155,696 + +0.4
155,763 - -0.4
155,802 - -1.2
155,867 + +0.1
155,869 + -0.8
155,875 - +0.4
155,897 - -0.1
155,964 + TX73_000705 0.14 +0.2
155,964 + TX73_000705 0.14 +0.6
155,964 + TX73_000705 0.14 +0.4
155,972 - TX73_000705 0.14 +0.4
155,972 - TX73_000705 0.14 +0.6
155,977 + TX73_000705 0.15 +0.3
156,009 + TX73_000705 0.18 +0.5
156,017 - TX73_000705 0.19 -0.3
156,187 + TX73_000705 0.34 +0.4
156,195 - TX73_000705 0.35 +0.0
156,195 - TX73_000705 0.35 +0.8
156,219 + TX73_000705 0.37 -0.0
156,253 + TX73_000705 0.40 +0.7
156,253 + TX73_000705 0.40 +0.7
156,261 - TX73_000705 0.41 +0.2
156,261 - TX73_000705 0.41 +0.1
156,261 - TX73_000705 0.41 +1.7
156,297 + TX73_000705 0.44 +1.1
156,365 - TX73_000705 0.50 -0.6
156,398 + TX73_000705 0.53 +0.4
156,398 + TX73_000705 0.53 -0.3
156,403 + TX73_000705 0.54 +0.2
156,411 - TX73_000705 0.55 -1.2
156,523 + TX73_000705 0.65 +0.9
156,541 - TX73_000705 0.67 +0.4
156,554 - TX73_000705 0.68 -0.1
156,621 + TX73_000705 0.74 -0.2
156,626 + TX73_000705 0.74 +0.2
156,629 - TX73_000705 0.75 +1.2
156,633 + TX73_000705 0.75 -0.1
156,634 - TX73_000705 0.75 +0.5
156,634 - TX73_000705 0.75 +0.4
156,665 - TX73_000705 0.78 +0.5
156,665 - TX73_000705 0.78 -0.4
156,740 + TX73_000705 0.85 -0.6
156,760 + TX73_000705 0.87 -0.5
156,799 + +0.6
156,833 + -0.0
156,891 - -0.1
156,892 - -0.3
156,911 - +0.3
156,913 + +1.0
156,939 - +1.0
156,960 + +0.6
157,050 + TX73_000710 0.15 +0.7
157,060 + TX73_000710 0.16 -0.4
157,128 - TX73_000710 0.24 -0.3
157,158 + TX73_000710 0.28 +1.0
157,188 + TX73_000710 0.31 -1.9
157,188 + TX73_000710 0.31 +0.1
157,303 + TX73_000710 0.45 +0.9
157,363 + TX73_000710 0.52 -0.1
157,378 - TX73_000710 0.54 -0.1
157,389 + TX73_000710 0.55 +0.4
157,397 - TX73_000710 0.56 -0.4
157,404 - TX73_000710 0.57 -0.0
157,422 + TX73_000710 0.59 -0.4
157,429 + TX73_000710 0.60 +0.1
157,430 - TX73_000710 0.60 +0.3
157,437 - TX73_000710 0.61 -0.5
157,451 + TX73_000710 0.62 +0.4
157,477 - TX73_000710 0.65 -0.3
157,477 - TX73_000710 0.65 +0.5
157,550 + TX73_000710 0.74 -0.3
157,576 + TX73_000710 0.77 +0.2
157,687 + +0.4
157,712 + +0.4
157,870 + +0.5
157,870 + +0.4
157,893 + -0.2

Or see this region's nucleotide sequence