Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_006755

Experiment: NFM_No_Mo_Plus_VCl3 with acetate trihydrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_006750 and TX73_006755 are separated by 376 nucleotidesTX73_006755 and TX73_006760 are separated by 28 nucleotidesTX73_006760 and TX73_006765 overlap by 4 nucleotides TX73_006750: TX73_006750 - response regulator, at 1,435,621 to 1,436,307 _006750 TX73_006755: TX73_006755 - alpha/beta hydrolase, at 1,436,684 to 1,436,929 _006755 TX73_006760: TX73_006760 - cytochrome ubiquinol oxidase subunit I, at 1,436,958 to 1,437,560 _006760 TX73_006765: TX73_006765 - cytochrome d ubiquinol oxidase subunit II, at 1,437,557 to 1,438,582 _006765 Position (kb) 1436 1437Strain fitness (log2 ratio) -2 -1 0 1at 1435.721 kb on + strand, within TX73_006750at 1435.721 kb on + strand, within TX73_006750at 1435.721 kb on + strand, within TX73_006750at 1435.721 kb on + strand, within TX73_006750at 1435.721 kb on + strand, within TX73_006750at 1435.721 kb on + strand, within TX73_006750at 1435.721 kb on + strand, within TX73_006750at 1435.729 kb on - strand, within TX73_006750at 1435.729 kb on - strand, within TX73_006750at 1435.729 kb on - strand, within TX73_006750at 1435.954 kb on + strand, within TX73_006750at 1435.993 kb on + strand, within TX73_006750at 1436.362 kb on + strandat 1436.379 kb on + strandat 1436.452 kb on + strandat 1436.528 kb on - strandat 1436.808 kb on + strand, within TX73_006755at 1436.941 kb on + strandat 1436.983 kb on - strandat 1437.077 kb on - strand, within TX73_006760at 1437.085 kb on - strand, within TX73_006760at 1437.122 kb on + strand, within TX73_006760at 1437.151 kb on + strand, within TX73_006760at 1437.154 kb on + strand, within TX73_006760at 1437.159 kb on - strand, within TX73_006760at 1437.209 kb on + strand, within TX73_006760at 1437.209 kb on + strand, within TX73_006760at 1437.209 kb on + strand, within TX73_006760at 1437.209 kb on + strand, within TX73_006760at 1437.217 kb on - strand, within TX73_006760at 1437.217 kb on - strand, within TX73_006760at 1437.217 kb on - strand, within TX73_006760at 1437.217 kb on - strand, within TX73_006760at 1437.350 kb on - strand, within TX73_006760at 1437.450 kb on - strand, within TX73_006760at 1437.485 kb on - strand, within TX73_006760at 1437.520 kb on + strandat 1437.530 kb on + strandat 1437.533 kb on - strandat 1437.541 kb on + strandat 1437.642 kb on + strandat 1437.642 kb on + strandat 1437.732 kb on - strand, within TX73_006765at 1437.767 kb on + strand, within TX73_006765at 1437.775 kb on - strand, within TX73_006765at 1437.839 kb on - strand, within TX73_006765at 1437.843 kb on - strand, within TX73_006765

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM_No_Mo_Plus_VCl3 with acetate trihydrate
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1,435,721 + TX73_006750 0.15 -0.4
1,435,721 + TX73_006750 0.15 -0.2
1,435,721 + TX73_006750 0.15 +0.4
1,435,721 + TX73_006750 0.15 +1.0
1,435,721 + TX73_006750 0.15 +0.5
1,435,721 + TX73_006750 0.15 +0.0
1,435,721 + TX73_006750 0.15 +0.2
1,435,729 - TX73_006750 0.16 +1.6
1,435,729 - TX73_006750 0.16 -0.2
1,435,729 - TX73_006750 0.16 +1.2
1,435,954 + TX73_006750 0.48 +0.1
1,435,993 + TX73_006750 0.54 +0.1
1,436,362 + +0.2
1,436,379 + +0.2
1,436,452 + +0.2
1,436,528 - +0.8
1,436,808 + TX73_006755 0.50 -2.3
1,436,941 + +0.1
1,436,983 - +0.6
1,437,077 - TX73_006760 0.20 -0.2
1,437,085 - TX73_006760 0.21 -0.2
1,437,122 + TX73_006760 0.27 +0.1
1,437,151 + TX73_006760 0.32 +0.3
1,437,154 + TX73_006760 0.33 +0.6
1,437,159 - TX73_006760 0.33 +0.6
1,437,209 + TX73_006760 0.42 +0.0
1,437,209 + TX73_006760 0.42 +0.4
1,437,209 + TX73_006760 0.42 -0.7
1,437,209 + TX73_006760 0.42 -0.6
1,437,217 - TX73_006760 0.43 -0.4
1,437,217 - TX73_006760 0.43 -0.5
1,437,217 - TX73_006760 0.43 -0.2
1,437,217 - TX73_006760 0.43 -0.1
1,437,350 - TX73_006760 0.65 -0.3
1,437,450 - TX73_006760 0.82 -0.7
1,437,485 - TX73_006760 0.87 -0.2
1,437,520 + +0.6
1,437,530 + +0.9
1,437,533 - -0.0
1,437,541 + +0.1
1,437,642 + -0.9
1,437,642 + -0.1
1,437,732 - TX73_006765 0.17 -0.1
1,437,767 + TX73_006765 0.20 +0.4
1,437,775 - TX73_006765 0.21 -0.3
1,437,839 - TX73_006765 0.27 +0.5
1,437,843 - TX73_006765 0.28 +0.9

Or see this region's nucleotide sequence