Experiment: NFM_No_Mo_Plus_VCl3 with acetate trihydrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003190 and TX73_003195 are separated by 95 nucleotides TX73_003195 and TX73_003200 are separated by 19 nucleotides TX73_003200 and TX73_003205 are separated by 40 nucleotides
TX73_003190: TX73_003190 - YbaB/EbfC family nucleoid-associated protein, at 684,543 to 684,863
_003190
TX73_003195: TX73_003195 - recombination mediator RecR, at 684,959 to 685,561
_003195
TX73_003200: TX73_003200 - hypothetical protein, at 685,581 to 686,009
_003200
TX73_003205: TX73_003205 - MFS transporter, at 686,050 to 687,348
_003205
Position (kb) 685
686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 684.584 kb on - strand, within TX73_003190 at 684.593 kb on + strand, within TX73_003190 at 684.593 kb on + strand, within TX73_003190 at 684.595 kb on - strand, within TX73_003190 at 684.598 kb on + strand, within TX73_003190 at 684.598 kb on + strand, within TX73_003190 at 684.601 kb on - strand, within TX73_003190 at 684.606 kb on - strand, within TX73_003190 at 684.608 kb on + strand, within TX73_003190 at 684.613 kb on + strand, within TX73_003190 at 684.623 kb on + strand, within TX73_003190 at 684.623 kb on + strand, within TX73_003190 at 684.627 kb on - strand, within TX73_003190 at 684.631 kb on - strand, within TX73_003190 at 684.631 kb on - strand, within TX73_003190 at 684.646 kb on + strand, within TX73_003190 at 684.663 kb on + strand, within TX73_003190 at 684.663 kb on + strand, within TX73_003190 at 684.663 kb on + strand, within TX73_003190 at 684.669 kb on - strand, within TX73_003190 at 684.671 kb on - strand, within TX73_003190 at 684.679 kb on + strand, within TX73_003190 at 684.679 kb on + strand, within TX73_003190 at 684.687 kb on - strand, within TX73_003190 at 684.687 kb on - strand, within TX73_003190 at 684.703 kb on - strand, within TX73_003190 at 684.716 kb on + strand, within TX73_003190 at 684.721 kb on + strand, within TX73_003190 at 684.724 kb on - strand, within TX73_003190 at 684.729 kb on - strand, within TX73_003190 at 684.731 kb on + strand, within TX73_003190 at 684.731 kb on - strand, within TX73_003190 at 684.747 kb on + strand, within TX73_003190 at 684.777 kb on - strand, within TX73_003190 at 684.793 kb on - strand, within TX73_003190 at 684.793 kb on - strand, within TX73_003190 at 684.798 kb on + strand, within TX73_003190 at 684.816 kb on + strand, within TX73_003190 at 684.818 kb on - strand, within TX73_003190 at 684.829 kb on + strand, within TX73_003190 at 684.829 kb on + strand, within TX73_003190 at 684.847 kb on + strand at 684.855 kb on - strand at 684.858 kb on + strand at 684.860 kb on - strand at 684.861 kb on - strand at 684.861 kb on - strand at 684.863 kb on + strand at 684.865 kb on - strand at 684.865 kb on - strand at 684.865 kb on - strand at 684.885 kb on + strand at 684.893 kb on - strand at 684.893 kb on - strand at 684.918 kb on - strand at 684.923 kb on + strand at 684.934 kb on + strand at 684.934 kb on + strand at 684.947 kb on - strand at 684.947 kb on - strand at 684.952 kb on - strand at 684.955 kb on + strand at 684.955 kb on + strand at 685.054 kb on + strand, within TX73_003195 at 685.095 kb on + strand, within TX73_003195 at 685.132 kb on + strand, within TX73_003195 at 685.209 kb on + strand, within TX73_003195 at 685.370 kb on - strand, within TX73_003195 at 685.417 kb on - strand, within TX73_003195 at 685.422 kb on + strand, within TX73_003195 at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.555 kb on + strand at 685.563 kb on - strand at 685.563 kb on - strand at 685.563 kb on - strand at 685.568 kb on - strand at 685.569 kb on + strand at 685.601 kb on - strand at 685.639 kb on + strand, within TX73_003200 at 685.647 kb on - strand, within TX73_003200 at 685.647 kb on - strand, within TX73_003200 at 685.655 kb on - strand, within TX73_003200 at 685.678 kb on - strand, within TX73_003200 at 685.691 kb on + strand, within TX73_003200 at 685.701 kb on + strand, within TX73_003200 at 685.765 kb on - strand, within TX73_003200 at 685.772 kb on + strand, within TX73_003200 at 685.779 kb on + strand, within TX73_003200 at 685.780 kb on - strand, within TX73_003200 at 685.819 kb on + strand, within TX73_003200 at 685.829 kb on + strand, within TX73_003200 at 685.836 kb on + strand, within TX73_003200 at 685.837 kb on - strand, within TX73_003200 at 685.843 kb on - strand, within TX73_003200 at 685.880 kb on + strand, within TX73_003200 at 685.893 kb on - strand, within TX73_003200 at 685.895 kb on + strand, within TX73_003200 at 685.895 kb on + strand, within TX73_003200 at 685.895 kb on + strand, within TX73_003200 at 685.924 kb on + strand, within TX73_003200 at 685.924 kb on + strand, within TX73_003200 at 685.924 kb on + strand, within TX73_003200 at 685.934 kb on - strand, within TX73_003200 at 685.936 kb on + strand, within TX73_003200 at 685.962 kb on + strand, within TX73_003200 at 685.962 kb on + strand, within TX73_003200 at 685.962 kb on + strand, within TX73_003200 at 685.965 kb on - strand, within TX73_003200 at 686.020 kb on + strand at 686.030 kb on - strand at 686.045 kb on - strand at 686.056 kb on - strand at 686.089 kb on + strand at 686.117 kb on - strand at 686.144 kb on - strand at 686.144 kb on - strand at 686.178 kb on + strand at 686.225 kb on + strand, within TX73_003205 at 686.228 kb on - strand, within TX73_003205 at 686.230 kb on + strand, within TX73_003205 at 686.252 kb on - strand, within TX73_003205 at 686.254 kb on + strand, within TX73_003205 at 686.372 kb on + strand, within TX73_003205 at 686.407 kb on + strand, within TX73_003205 at 686.407 kb on + strand, within TX73_003205 at 686.415 kb on - strand, within TX73_003205 at 686.415 kb on - strand, within TX73_003205 at 686.415 kb on - strand, within TX73_003205 at 686.439 kb on + strand, within TX73_003205 at 686.441 kb on + strand, within TX73_003205 at 686.444 kb on + strand, within TX73_003205 at 686.452 kb on - strand, within TX73_003205 at 686.485 kb on + strand, within TX73_003205 at 686.485 kb on - strand, within TX73_003205 at 686.487 kb on + strand, within TX73_003205 at 686.562 kb on + strand, within TX73_003205 at 686.562 kb on + strand, within TX73_003205 at 686.602 kb on - strand, within TX73_003205 at 686.604 kb on + strand, within TX73_003205 at 686.607 kb on - strand, within TX73_003205 at 686.622 kb on - strand, within TX73_003205 at 686.662 kb on + strand, within TX73_003205 at 686.662 kb on + strand, within TX73_003205 at 686.670 kb on - strand, within TX73_003205 at 686.672 kb on + strand, within TX73_003205 at 686.733 kb on + strand, within TX73_003205 at 686.744 kb on + strand, within TX73_003205 at 686.744 kb on + strand, within TX73_003205 at 686.752 kb on - strand, within TX73_003205 at 686.765 kb on + strand, within TX73_003205 at 686.770 kb on + strand, within TX73_003205 at 686.790 kb on + strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.798 kb on - strand, within TX73_003205 at 686.801 kb on - strand, within TX73_003205 at 686.808 kb on + strand, within TX73_003205 at 686.809 kb on - strand, within TX73_003205 at 686.837 kb on - strand, within TX73_003205 at 686.846 kb on + strand, within TX73_003205 at 686.881 kb on + strand, within TX73_003205 at 686.911 kb on - strand, within TX73_003205 at 686.916 kb on - strand, within TX73_003205 at 686.947 kb on + strand, within TX73_003205 at 686.947 kb on + strand, within TX73_003205 at 686.948 kb on + strand, within TX73_003205 at 686.963 kb on + strand, within TX73_003205 at 686.985 kb on - strand, within TX73_003205 at 687.001 kb on + strand, within TX73_003205 at 687.009 kb on - strand, within TX73_003205
Per-strain Table
Position Strand Gene LocusTag Fraction NFM_No_Mo_Plus_VCl3 with acetate trihydrate remove 684,584 - TX73_003190 0.13 -0.2 684,593 + TX73_003190 0.16 +0.7 684,593 + TX73_003190 0.16 +0.4 684,595 - TX73_003190 0.16 -0.8 684,598 + TX73_003190 0.17 +0.2 684,598 + TX73_003190 0.17 -0.0 684,601 - TX73_003190 0.18 -2.0 684,606 - TX73_003190 0.20 +0.1 684,608 + TX73_003190 0.20 +1.4 684,613 + TX73_003190 0.22 +0.5 684,623 + TX73_003190 0.25 -0.4 684,623 + TX73_003190 0.25 -0.1 684,627 - TX73_003190 0.26 +0.2 684,631 - TX73_003190 0.27 +0.3 684,631 - TX73_003190 0.27 -0.4 684,646 + TX73_003190 0.32 +0.7 684,663 + TX73_003190 0.37 -0.4 684,663 + TX73_003190 0.37 +0.5 684,663 + TX73_003190 0.37 -0.2 684,669 - TX73_003190 0.39 -0.3 684,671 - TX73_003190 0.40 +0.1 684,679 + TX73_003190 0.42 -0.8 684,679 + TX73_003190 0.42 -0.1 684,687 - TX73_003190 0.45 -0.7 684,687 - TX73_003190 0.45 +0.1 684,703 - TX73_003190 0.50 +0.0 684,716 + TX73_003190 0.54 -0.1 684,721 + TX73_003190 0.55 +0.7 684,724 - TX73_003190 0.56 -0.1 684,729 - TX73_003190 0.58 +0.2 684,731 + TX73_003190 0.59 +0.6 684,731 - TX73_003190 0.59 -0.1 684,747 + TX73_003190 0.64 +0.5 684,777 - TX73_003190 0.73 +0.8 684,793 - TX73_003190 0.78 -0.3 684,793 - TX73_003190 0.78 +0.1 684,798 + TX73_003190 0.79 -0.9 684,816 + TX73_003190 0.85 -0.1 684,818 - TX73_003190 0.86 -0.3 684,829 + TX73_003190 0.89 -0.8 684,829 + TX73_003190 0.89 +0.4 684,847 + +0.2 684,855 - +0.4 684,858 + -0.5 684,860 - -1.2 684,861 - +1.1 684,861 - -1.2 684,863 + -0.5 684,865 - +1.0 684,865 - +0.4 684,865 - -0.4 684,885 + -0.6 684,893 - -0.5 684,893 - +0.7 684,918 - +0.4 684,923 + +0.1 684,934 + +0.3 684,934 + -0.3 684,947 - +0.5 684,947 - +0.2 684,952 - -0.7 684,955 + -0.8 684,955 + -0.5 685,054 + TX73_003195 0.16 +1.4 685,095 + TX73_003195 0.23 +2.4 685,132 + TX73_003195 0.29 +2.4 685,209 + TX73_003195 0.41 +0.8 685,370 - TX73_003195 0.68 +2.4 685,417 - TX73_003195 0.76 +2.4 685,422 + TX73_003195 0.77 +2.4 685,555 + -0.6 685,555 + -0.3 685,555 + -0.5 685,555 + -0.5 685,555 + +0.6 685,555 + +0.9 685,563 - -0.6 685,563 - +0.0 685,563 - -0.3 685,568 - +0.5 685,569 + +0.2 685,601 - +1.1 685,639 + TX73_003200 0.14 +0.5 685,647 - TX73_003200 0.15 +0.1 685,647 - TX73_003200 0.15 +0.4 685,655 - TX73_003200 0.17 -1.1 685,678 - TX73_003200 0.23 +0.3 685,691 + TX73_003200 0.26 +0.1 685,701 + TX73_003200 0.28 +0.2 685,765 - TX73_003200 0.43 +0.3 685,772 + TX73_003200 0.45 +0.4 685,779 + TX73_003200 0.46 +0.4 685,780 - TX73_003200 0.46 +1.3 685,819 + TX73_003200 0.55 +1.0 685,829 + TX73_003200 0.58 +0.3 685,836 + TX73_003200 0.59 -0.1 685,837 - TX73_003200 0.60 +1.1 685,843 - TX73_003200 0.61 +1.7 685,880 + TX73_003200 0.70 -0.2 685,893 - TX73_003200 0.73 -0.1 685,895 + TX73_003200 0.73 -0.0 685,895 + TX73_003200 0.73 +1.1 685,895 + TX73_003200 0.73 +1.6 685,924 + TX73_003200 0.80 +0.4 685,924 + TX73_003200 0.80 +1.2 685,924 + TX73_003200 0.80 +1.3 685,934 - TX73_003200 0.82 +1.2 685,936 + TX73_003200 0.83 +1.3 685,962 + TX73_003200 0.89 -0.6 685,962 + TX73_003200 0.89 +1.4 685,962 + TX73_003200 0.89 -0.3 685,965 - TX73_003200 0.90 -0.7 686,020 + +0.1 686,030 - +0.4 686,045 - +0.1 686,056 - -0.7 686,089 + -0.9 686,117 - +0.5 686,144 - -1.1 686,144 - -0.2 686,178 + -0.1 686,225 + TX73_003205 0.13 -1.1 686,228 - TX73_003205 0.14 -1.4 686,230 + TX73_003205 0.14 -0.3 686,252 - TX73_003205 0.16 +0.6 686,254 + TX73_003205 0.16 +0.9 686,372 + TX73_003205 0.25 -0.1 686,407 + TX73_003205 0.27 -1.1 686,407 + TX73_003205 0.27 +0.8 686,415 - TX73_003205 0.28 +0.0 686,415 - TX73_003205 0.28 +0.4 686,415 - TX73_003205 0.28 +0.5 686,439 + TX73_003205 0.30 +0.4 686,441 + TX73_003205 0.30 -0.5 686,444 + TX73_003205 0.30 -0.2 686,452 - TX73_003205 0.31 -0.9 686,485 + TX73_003205 0.33 +0.8 686,485 - TX73_003205 0.33 -0.1 686,487 + TX73_003205 0.34 -0.1 686,562 + TX73_003205 0.39 +0.8 686,562 + TX73_003205 0.39 -0.7 686,602 - TX73_003205 0.42 +1.2 686,604 + TX73_003205 0.43 +1.5 686,607 - TX73_003205 0.43 -0.0 686,622 - TX73_003205 0.44 +1.5 686,662 + TX73_003205 0.47 +0.2 686,662 + TX73_003205 0.47 -1.0 686,670 - TX73_003205 0.48 -0.8 686,672 + TX73_003205 0.48 +0.3 686,733 + TX73_003205 0.53 -0.3 686,744 + TX73_003205 0.53 -0.9 686,744 + TX73_003205 0.53 +0.1 686,752 - TX73_003205 0.54 +1.0 686,765 + TX73_003205 0.55 -0.6 686,770 + TX73_003205 0.55 +2.2 686,790 + TX73_003205 0.57 -0.4 686,798 - TX73_003205 0.58 -0.9 686,798 - TX73_003205 0.58 +0.1 686,798 - TX73_003205 0.58 +0.4 686,798 - TX73_003205 0.58 -0.2 686,798 - TX73_003205 0.58 +0.1 686,798 - TX73_003205 0.58 -0.1 686,801 - TX73_003205 0.58 -0.9 686,808 + TX73_003205 0.58 +0.7 686,809 - TX73_003205 0.58 -0.3 686,837 - TX73_003205 0.61 +0.7 686,846 + TX73_003205 0.61 +0.4 686,881 + TX73_003205 0.64 -0.6 686,911 - TX73_003205 0.66 -0.9 686,916 - TX73_003205 0.67 +0.4 686,947 + TX73_003205 0.69 -0.1 686,947 + TX73_003205 0.69 +0.5 686,948 + TX73_003205 0.69 -1.5 686,963 + TX73_003205 0.70 +0.7 686,985 - TX73_003205 0.72 +0.5 687,001 + TX73_003205 0.73 +0.5 687,009 - TX73_003205 0.74 +1.0
Or see this region's nucleotide sequence