Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024010

Experiment: NFM_No_Mo_Plus_VCl3 with acetate trihydrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024000 and TX73_024005 are separated by 15 nucleotidesTX73_024005 and TX73_024010 are separated by 2 nucleotidesTX73_024010 and TX73_024015 are separated by 37 nucleotidesTX73_024015 and TX73_024020 overlap by 1 nucleotidesTX73_024020 and TX73_024025 overlap by 4 nucleotides TX73_024000: TX73_024000 - SIR2 family protein, at 5,206,324 to 5,207,226 _024000 TX73_024005: TX73_024005 - hypothetical protein, at 5,207,242 to 5,207,520 _024005 TX73_024010: TX73_024010 - putative nitrogen fixation protein NifT, at 5,207,523 to 5,207,723 _024010 TX73_024015: TX73_024015 - nitrogen fixation protein NifZ, at 5,207,761 to 5,207,994 _024015 TX73_024020: TX73_024020 - nitrogen fixation protein NifZ, at 5,207,994 to 5,208,293 _024020 TX73_024025: TX73_024025 - 4Fe4S-binding leucine-rich repeat protein, at 5,208,290 to 5,209,075 _024025 Position (kb) 5207 5208Strain fitness (log2 ratio) -2 -1 0 1at 5206.534 kb on + strand, within TX73_024000at 5206.639 kb on - strand, within TX73_024000at 5206.693 kb on + strand, within TX73_024000at 5206.721 kb on + strand, within TX73_024000at 5206.796 kb on + strand, within TX73_024000at 5206.855 kb on + strand, within TX73_024000at 5206.863 kb on - strand, within TX73_024000at 5206.971 kb on - strand, within TX73_024000at 5207.003 kb on + strand, within TX73_024000at 5207.003 kb on + strand, within TX73_024000at 5207.048 kb on + strand, within TX73_024000at 5207.052 kb on - strand, within TX73_024000at 5207.070 kb on + strand, within TX73_024000at 5207.088 kb on - strand, within TX73_024000at 5207.132 kb on + strand, within TX73_024000at 5207.172 kb on + strandat 5207.185 kb on + strandat 5207.185 kb on + strandat 5207.185 kb on + strandat 5207.185 kb on + strandat 5207.185 kb on + strandat 5207.214 kb on - strandat 5207.228 kb on + strandat 5207.236 kb on + strandat 5207.263 kb on + strandat 5207.275 kb on + strand, within TX73_024005at 5207.275 kb on + strand, within TX73_024005at 5207.282 kb on - strand, within TX73_024005at 5207.283 kb on - strand, within TX73_024005at 5207.295 kb on - strand, within TX73_024005at 5207.298 kb on + strand, within TX73_024005at 5207.317 kb on + strand, within TX73_024005at 5207.322 kb on + strand, within TX73_024005at 5207.322 kb on + strand, within TX73_024005at 5207.371 kb on + strand, within TX73_024005at 5207.387 kb on - strand, within TX73_024005at 5207.389 kb on - strand, within TX73_024005at 5207.396 kb on - strand, within TX73_024005at 5207.408 kb on + strand, within TX73_024005at 5207.419 kb on + strand, within TX73_024005at 5207.441 kb on - strand, within TX73_024005at 5207.449 kb on - strand, within TX73_024005at 5207.451 kb on - strand, within TX73_024005at 5207.471 kb on + strand, within TX73_024005at 5207.471 kb on + strand, within TX73_024005at 5207.479 kb on - strand, within TX73_024005at 5207.521 kb on + strandat 5207.529 kb on - strandat 5207.537 kb on + strandat 5207.545 kb on - strand, within TX73_024010at 5207.604 kb on - strand, within TX73_024010at 5207.640 kb on - strand, within TX73_024010at 5207.657 kb on + strand, within TX73_024010at 5207.665 kb on - strand, within TX73_024010at 5207.665 kb on - strand, within TX73_024010at 5207.676 kb on + strand, within TX73_024010at 5207.684 kb on - strand, within TX73_024010at 5207.721 kb on + strandat 5207.732 kb on + strandat 5207.740 kb on - strandat 5207.759 kb on + strandat 5207.759 kb on + strandat 5207.781 kb on - strandat 5207.817 kb on + strand, within TX73_024015at 5207.848 kb on - strand, within TX73_024015at 5207.858 kb on + strand, within TX73_024015at 5207.903 kb on + strand, within TX73_024015at 5207.929 kb on - strand, within TX73_024015at 5207.967 kb on - strand, within TX73_024015at 5208.010 kb on + strandat 5208.018 kb on - strandat 5208.026 kb on - strand, within TX73_024020at 5208.069 kb on + strand, within TX73_024020at 5208.072 kb on - strand, within TX73_024020at 5208.159 kb on - strand, within TX73_024020at 5208.165 kb on - strand, within TX73_024020at 5208.230 kb on - strand, within TX73_024020at 5208.232 kb on - strand, within TX73_024020at 5208.233 kb on - strand, within TX73_024020at 5208.291 kb on - strandat 5208.296 kb on - strandat 5208.320 kb on - strandat 5208.330 kb on - strandat 5208.335 kb on - strandat 5208.336 kb on - strandat 5208.357 kb on + strandat 5208.427 kb on - strand, within TX73_024025at 5208.506 kb on - strand, within TX73_024025at 5208.516 kb on - strand, within TX73_024025at 5208.519 kb on + strand, within TX73_024025at 5208.527 kb on - strand, within TX73_024025at 5208.546 kb on - strand, within TX73_024025at 5208.570 kb on + strand, within TX73_024025at 5208.597 kb on - strand, within TX73_024025at 5208.608 kb on - strand, within TX73_024025at 5208.719 kb on + strand, within TX73_024025

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Per-strain Table

Position Strand Gene LocusTag Fraction NFM_No_Mo_Plus_VCl3 with acetate trihydrate
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5,206,534 + TX73_024000 0.23 -1.1
5,206,639 - TX73_024000 0.35 -0.7
5,206,693 + TX73_024000 0.41 -0.3
5,206,721 + TX73_024000 0.44 -0.4
5,206,796 + TX73_024000 0.52 -1.1
5,206,855 + TX73_024000 0.59 +1.1
5,206,863 - TX73_024000 0.60 +0.9
5,206,971 - TX73_024000 0.72 +0.4
5,207,003 + TX73_024000 0.75 +1.4
5,207,003 + TX73_024000 0.75 -0.9
5,207,048 + TX73_024000 0.80 -0.7
5,207,052 - TX73_024000 0.81 -0.2
5,207,070 + TX73_024000 0.83 +0.0
5,207,088 - TX73_024000 0.85 -0.0
5,207,132 + TX73_024000 0.89 -0.1
5,207,172 + +0.6
5,207,185 + -0.7
5,207,185 + -2.1
5,207,185 + -0.1
5,207,185 + -0.0
5,207,185 + +0.2
5,207,214 - -0.1
5,207,228 + +0.3
5,207,236 + -0.3
5,207,263 + +0.2
5,207,275 + TX73_024005 0.12 +0.0
5,207,275 + TX73_024005 0.12 -0.2
5,207,282 - TX73_024005 0.14 +0.3
5,207,283 - TX73_024005 0.15 +0.2
5,207,295 - TX73_024005 0.19 +0.3
5,207,298 + TX73_024005 0.20 +0.4
5,207,317 + TX73_024005 0.27 -0.1
5,207,322 + TX73_024005 0.29 -0.7
5,207,322 + TX73_024005 0.29 +0.4
5,207,371 + TX73_024005 0.46 -1.5
5,207,387 - TX73_024005 0.52 +0.1
5,207,389 - TX73_024005 0.53 +0.5
5,207,396 - TX73_024005 0.55 -0.2
5,207,408 + TX73_024005 0.59 -0.2
5,207,419 + TX73_024005 0.63 -0.4
5,207,441 - TX73_024005 0.71 +0.3
5,207,449 - TX73_024005 0.74 +0.7
5,207,451 - TX73_024005 0.75 -0.2
5,207,471 + TX73_024005 0.82 -1.1
5,207,471 + TX73_024005 0.82 -0.5
5,207,479 - TX73_024005 0.85 -0.7
5,207,521 + -0.3
5,207,529 - -0.2
5,207,537 + -0.3
5,207,545 - TX73_024010 0.11 +0.3
5,207,604 - TX73_024010 0.40 +0.1
5,207,640 - TX73_024010 0.58 -0.4
5,207,657 + TX73_024010 0.67 +0.1
5,207,665 - TX73_024010 0.71 -0.5
5,207,665 - TX73_024010 0.71 +0.4
5,207,676 + TX73_024010 0.76 +0.5
5,207,684 - TX73_024010 0.80 +0.4
5,207,721 + -0.2
5,207,732 + +0.4
5,207,740 - -1.6
5,207,759 + +0.6
5,207,759 + +1.3
5,207,781 - -0.9
5,207,817 + TX73_024015 0.24 -0.1
5,207,848 - TX73_024015 0.37 -0.5
5,207,858 + TX73_024015 0.41 -0.0
5,207,903 + TX73_024015 0.61 -0.6
5,207,929 - TX73_024015 0.72 -0.9
5,207,967 - TX73_024015 0.88 -0.2
5,208,010 + -0.2
5,208,018 - -0.5
5,208,026 - TX73_024020 0.11 -0.9
5,208,069 + TX73_024020 0.25 -0.3
5,208,072 - TX73_024020 0.26 -0.7
5,208,159 - TX73_024020 0.55 -1.1
5,208,165 - TX73_024020 0.57 -0.2
5,208,230 - TX73_024020 0.79 -0.0
5,208,232 - TX73_024020 0.79 -0.3
5,208,233 - TX73_024020 0.80 -0.5
5,208,291 - -0.4
5,208,296 - +0.6
5,208,320 - -0.4
5,208,330 - +0.0
5,208,335 - +0.1
5,208,336 - +0.4
5,208,357 + -0.2
5,208,427 - TX73_024025 0.17 -1.1
5,208,506 - TX73_024025 0.27 +0.7
5,208,516 - TX73_024025 0.29 -0.0
5,208,519 + TX73_024025 0.29 -0.3
5,208,527 - TX73_024025 0.30 -0.2
5,208,546 - TX73_024025 0.33 -0.6
5,208,570 + TX73_024025 0.36 +0.4
5,208,597 - TX73_024025 0.39 -0.3
5,208,608 - TX73_024025 0.40 -0.0
5,208,719 + TX73_024025 0.55 +0.5

Or see this region's nucleotide sequence