Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_015780

Experiment: Sulfoacetic sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_015770 and TX73_015775 are separated by 150 nucleotidesTX73_015775 and TX73_015780 are separated by 42 nucleotidesTX73_015780 and TX73_015785 are separated by 266 nucleotides TX73_015770: TX73_015770 - RNA degradosome polyphosphate kinase, at 3,450,483 to 3,452,693 _015770 TX73_015775: TX73_015775 - DnaA/Hda family protein, at 3,452,844 to 3,453,521 _015775 TX73_015780: TX73_015780 - CDP-alcohol phosphatidyltransferase family protein, at 3,453,564 to 3,454,109 _015780 TX73_015785: TX73_015785 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,454,376 to 3,455,449 _015785 Position (kb) 3453 3454 3455Strain fitness (log2 ratio) -2 -1 0 1at 3452.592 kb on - strandat 3452.592 kb on - strandat 3452.681 kb on + strandat 3452.708 kb on + strandat 3452.713 kb on + strandat 3452.713 kb on + strandat 3452.721 kb on - strandat 3452.728 kb on + strandat 3452.752 kb on - strandat 3452.825 kb on - strandat 3452.827 kb on + strandat 3452.843 kb on - strandat 3452.846 kb on + strandat 3452.869 kb on - strandat 3453.515 kb on + strandat 3453.516 kb on - strandat 3453.517 kb on + strandat 3453.525 kb on - strandat 3453.525 kb on - strandat 3453.563 kb on + strandat 3453.563 kb on + strandat 3453.569 kb on + strandat 3453.571 kb on - strandat 3453.571 kb on - strandat 3453.576 kb on - strandat 3453.577 kb on - strandat 3453.583 kb on + strandat 3453.605 kb on + strandat 3453.613 kb on - strandat 3453.633 kb on + strand, within TX73_015780at 3453.633 kb on + strand, within TX73_015780at 3453.641 kb on - strand, within TX73_015780at 3453.641 kb on - strand, within TX73_015780at 3453.641 kb on - strand, within TX73_015780at 3453.641 kb on - strand, within TX73_015780at 3453.641 kb on - strand, within TX73_015780at 3453.659 kb on + strand, within TX73_015780at 3453.665 kb on + strand, within TX73_015780at 3453.666 kb on + strand, within TX73_015780at 3453.666 kb on + strand, within TX73_015780at 3453.673 kb on - strand, within TX73_015780at 3453.674 kb on - strand, within TX73_015780at 3453.674 kb on - strand, within TX73_015780at 3453.703 kb on + strand, within TX73_015780at 3453.711 kb on - strand, within TX73_015780at 3453.711 kb on - strand, within TX73_015780at 3453.711 kb on - strand, within TX73_015780at 3453.711 kb on - strand, within TX73_015780at 3453.741 kb on + strand, within TX73_015780at 3453.741 kb on + strand, within TX73_015780at 3453.746 kb on + strand, within TX73_015780at 3453.791 kb on + strand, within TX73_015780at 3453.799 kb on - strand, within TX73_015780at 3453.825 kb on - strand, within TX73_015780at 3453.825 kb on - strand, within TX73_015780at 3453.826 kb on - strand, within TX73_015780at 3453.836 kb on + strand, within TX73_015780at 3453.836 kb on + strand, within TX73_015780at 3453.844 kb on - strand, within TX73_015780at 3453.845 kb on + strand, within TX73_015780at 3453.853 kb on - strand, within TX73_015780at 3453.853 kb on - strand, within TX73_015780at 3453.855 kb on + strand, within TX73_015780at 3453.876 kb on + strand, within TX73_015780at 3453.876 kb on - strand, within TX73_015780at 3453.883 kb on - strand, within TX73_015780at 3453.885 kb on + strand, within TX73_015780at 3453.900 kb on + strand, within TX73_015780at 3453.900 kb on - strand, within TX73_015780at 3453.908 kb on - strand, within TX73_015780at 3453.922 kb on + strand, within TX73_015780at 3453.922 kb on + strand, within TX73_015780at 3453.930 kb on - strand, within TX73_015780at 3453.988 kb on + strand, within TX73_015780at 3454.007 kb on - strand, within TX73_015780at 3454.011 kb on - strand, within TX73_015780at 3454.043 kb on + strand, within TX73_015780at 3454.053 kb on + strand, within TX73_015780at 3454.072 kb on - strandat 3454.073 kb on - strandat 3454.094 kb on + strandat 3454.115 kb on + strandat 3454.164 kb on - strandat 3454.183 kb on + strandat 3454.188 kb on + strandat 3454.191 kb on - strandat 3454.195 kb on - strandat 3454.212 kb on + strandat 3454.220 kb on - strandat 3454.224 kb on + strandat 3454.244 kb on + strandat 3454.244 kb on + strandat 3454.252 kb on - strandat 3454.282 kb on + strandat 3454.309 kb on - strandat 3454.318 kb on + strandat 3454.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sulfoacetic sulfur source
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3,452,592 - -2.7
3,452,592 - -0.5
3,452,681 + -2.7
3,452,708 + -0.7
3,452,713 + -0.8
3,452,713 + -0.6
3,452,721 - -0.6
3,452,728 + +0.2
3,452,752 - +0.2
3,452,825 - -0.2
3,452,827 + -0.1
3,452,843 - -0.0
3,452,846 + -0.1
3,452,869 - -0.6
3,453,515 + +0.6
3,453,516 - -0.3
3,453,517 + -0.2
3,453,525 - -1.1
3,453,525 - +0.5
3,453,563 + +0.5
3,453,563 + +1.2
3,453,569 + +0.4
3,453,571 - -0.9
3,453,571 - -0.3
3,453,576 - +0.3
3,453,577 - +0.8
3,453,583 + -0.6
3,453,605 + +0.7
3,453,613 - +0.1
3,453,633 + TX73_015780 0.13 +1.1
3,453,633 + TX73_015780 0.13 -0.2
3,453,641 - TX73_015780 0.14 +0.8
3,453,641 - TX73_015780 0.14 +1.0
3,453,641 - TX73_015780 0.14 -0.2
3,453,641 - TX73_015780 0.14 +0.5
3,453,641 - TX73_015780 0.14 +0.1
3,453,659 + TX73_015780 0.17 -0.1
3,453,665 + TX73_015780 0.18 -0.0
3,453,666 + TX73_015780 0.19 +0.3
3,453,666 + TX73_015780 0.19 +0.4
3,453,673 - TX73_015780 0.20 +0.3
3,453,674 - TX73_015780 0.20 +0.6
3,453,674 - TX73_015780 0.20 -0.8
3,453,703 + TX73_015780 0.25 +0.8
3,453,711 - TX73_015780 0.27 -1.3
3,453,711 - TX73_015780 0.27 -0.7
3,453,711 - TX73_015780 0.27 +0.8
3,453,711 - TX73_015780 0.27 +0.3
3,453,741 + TX73_015780 0.32 +1.1
3,453,741 + TX73_015780 0.32 +0.1
3,453,746 + TX73_015780 0.33 +0.6
3,453,791 + TX73_015780 0.42 +1.0
3,453,799 - TX73_015780 0.43 -0.4
3,453,825 - TX73_015780 0.48 -1.9
3,453,825 - TX73_015780 0.48 +0.6
3,453,826 - TX73_015780 0.48 +0.5
3,453,836 + TX73_015780 0.50 +0.5
3,453,836 + TX73_015780 0.50 +0.7
3,453,844 - TX73_015780 0.51 +0.4
3,453,845 + TX73_015780 0.51 +0.6
3,453,853 - TX73_015780 0.53 -0.2
3,453,853 - TX73_015780 0.53 +0.8
3,453,855 + TX73_015780 0.53 +1.1
3,453,876 + TX73_015780 0.57 +0.5
3,453,876 - TX73_015780 0.57 +0.2
3,453,883 - TX73_015780 0.58 +0.6
3,453,885 + TX73_015780 0.59 -0.6
3,453,900 + TX73_015780 0.62 -0.7
3,453,900 - TX73_015780 0.62 +0.4
3,453,908 - TX73_015780 0.63 -0.6
3,453,922 + TX73_015780 0.66 +0.4
3,453,922 + TX73_015780 0.66 +0.7
3,453,930 - TX73_015780 0.67 +0.6
3,453,988 + TX73_015780 0.78 +0.3
3,454,007 - TX73_015780 0.81 +1.4
3,454,011 - TX73_015780 0.82 -2.0
3,454,043 + TX73_015780 0.88 -0.7
3,454,053 + TX73_015780 0.90 -0.1
3,454,072 - +0.6
3,454,073 - +1.0
3,454,094 + -0.2
3,454,115 + +0.3
3,454,164 - +0.5
3,454,183 + +0.2
3,454,188 + -0.5
3,454,191 - -0.0
3,454,195 - -0.6
3,454,212 + -0.1
3,454,220 - -0.8
3,454,224 + +0.8
3,454,244 + -0.3
3,454,244 + -0.6
3,454,252 - -1.1
3,454,282 + -0.1
3,454,309 - -0.0
3,454,318 + +0.3
3,454,329 - -0.5

Or see this region's nucleotide sequence