Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019640

Experiment: Sulfoacetic sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_019630 and TX73_019635 are separated by 205 nucleotidesTX73_019635 and TX73_019640 are separated by 5 nucleotidesTX73_019640 and TX73_019645 are separated by 61 nucleotidesTX73_019645 and TX73_019650 are separated by 148 nucleotides TX73_019630: TX73_019630 - GGDEF domain-containing protein, at 4,290,118 to 4,291,257 _019630 TX73_019635: TX73_019635 - hypothetical protein, at 4,291,463 to 4,291,639 _019635 TX73_019640: TX73_019640 - DUF2000 family protein, at 4,291,645 to 4,292,055 _019640 TX73_019645: TX73_019645 - DUF4189 domain-containing protein, at 4,292,117 to 4,292,461 _019645 TX73_019650: TX73_019650 - enoyl-CoA hydratase-related protein, at 4,292,610 to 4,293,362 _019650 Position (kb) 4291 4292 4293Strain fitness (log2 ratio) -2 -1 0 1 2at 4290.695 kb on + strand, within TX73_019630at 4290.695 kb on + strand, within TX73_019630at 4290.703 kb on - strand, within TX73_019630at 4290.710 kb on - strand, within TX73_019630at 4290.720 kb on + strand, within TX73_019630at 4290.743 kb on + strand, within TX73_019630at 4290.786 kb on + strand, within TX73_019630at 4290.807 kb on - strand, within TX73_019630at 4290.814 kb on - strand, within TX73_019630at 4290.814 kb on - strand, within TX73_019630at 4290.816 kb on - strand, within TX73_019630at 4290.835 kb on + strand, within TX73_019630at 4290.848 kb on + strand, within TX73_019630at 4290.848 kb on + strand, within TX73_019630at 4290.848 kb on + strand, within TX73_019630at 4290.856 kb on - strand, within TX73_019630at 4290.858 kb on - strand, within TX73_019630at 4290.858 kb on - strand, within TX73_019630at 4290.860 kb on + strand, within TX73_019630at 4290.866 kb on - strand, within TX73_019630at 4290.868 kb on - strand, within TX73_019630at 4290.868 kb on - strand, within TX73_019630at 4290.892 kb on - strand, within TX73_019630at 4290.913 kb on - strand, within TX73_019630at 4290.913 kb on - strand, within TX73_019630at 4290.929 kb on + strand, within TX73_019630at 4290.937 kb on - strand, within TX73_019630at 4290.945 kb on - strand, within TX73_019630at 4290.950 kb on + strand, within TX73_019630at 4290.975 kb on - strand, within TX73_019630at 4290.982 kb on + strand, within TX73_019630at 4290.982 kb on + strand, within TX73_019630at 4290.990 kb on - strand, within TX73_019630at 4290.995 kb on + strand, within TX73_019630at 4290.995 kb on + strand, within TX73_019630at 4290.997 kb on + strand, within TX73_019630at 4291.068 kb on + strand, within TX73_019630at 4291.074 kb on + strand, within TX73_019630at 4291.082 kb on - strand, within TX73_019630at 4291.094 kb on - strand, within TX73_019630at 4291.120 kb on + strand, within TX73_019630at 4291.149 kb on - strandat 4291.159 kb on - strandat 4291.200 kb on + strandat 4291.212 kb on - strandat 4291.212 kb on - strandat 4291.220 kb on - strandat 4291.228 kb on - strandat 4291.258 kb on + strandat 4291.263 kb on + strandat 4291.302 kb on + strandat 4291.330 kb on - strandat 4291.335 kb on - strandat 4291.429 kb on + strandat 4291.465 kb on - strandat 4291.477 kb on + strandat 4291.477 kb on + strandat 4291.477 kb on + strandat 4291.477 kb on + strandat 4291.485 kb on - strand, within TX73_019635at 4291.529 kb on - strand, within TX73_019635at 4291.534 kb on - strand, within TX73_019635at 4291.556 kb on - strand, within TX73_019635at 4291.570 kb on + strand, within TX73_019635at 4291.586 kb on - strand, within TX73_019635at 4291.601 kb on + strand, within TX73_019635at 4291.625 kb on - strandat 4291.686 kb on - strand, within TX73_019640at 4291.704 kb on + strand, within TX73_019640at 4291.704 kb on - strand, within TX73_019640at 4291.750 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.786 kb on - strand, within TX73_019640at 4291.803 kb on - strand, within TX73_019640at 4291.833 kb on + strand, within TX73_019640at 4291.833 kb on + strand, within TX73_019640at 4291.841 kb on - strand, within TX73_019640at 4291.854 kb on - strand, within TX73_019640at 4291.860 kb on - strand, within TX73_019640at 4292.079 kb on - strandat 4292.099 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.101 kb on + strandat 4292.107 kb on - strandat 4292.109 kb on - strandat 4292.109 kb on - strandat 4292.120 kb on + strandat 4292.158 kb on - strand, within TX73_019645at 4292.188 kb on - strand, within TX73_019645at 4292.201 kb on - strand, within TX73_019645at 4292.231 kb on + strand, within TX73_019645at 4292.232 kb on - strand, within TX73_019645at 4292.234 kb on - strand, within TX73_019645at 4292.241 kb on + strand, within TX73_019645at 4292.297 kb on - strand, within TX73_019645at 4292.360 kb on + strand, within TX73_019645at 4292.380 kb on - strand, within TX73_019645at 4292.420 kb on - strand, within TX73_019645at 4292.453 kb on - strandat 4292.469 kb on + strandat 4292.549 kb on + strandat 4292.589 kb on + strandat 4292.597 kb on - strandat 4292.597 kb on - strandat 4292.608 kb on + strandat 4292.684 kb on - strandat 4292.696 kb on + strand, within TX73_019650at 4292.697 kb on + strand, within TX73_019650at 4292.704 kb on - strand, within TX73_019650at 4292.724 kb on + strand, within TX73_019650at 4292.733 kb on - strand, within TX73_019650at 4292.739 kb on + strand, within TX73_019650at 4292.747 kb on - strand, within TX73_019650at 4292.747 kb on - strand, within TX73_019650at 4292.750 kb on + strand, within TX73_019650at 4292.780 kb on - strand, within TX73_019650at 4292.784 kb on - strand, within TX73_019650at 4292.829 kb on + strand, within TX73_019650at 4292.829 kb on - strand, within TX73_019650at 4292.838 kb on - strand, within TX73_019650at 4292.869 kb on - strand, within TX73_019650at 4292.880 kb on + strand, within TX73_019650at 4292.880 kb on + strand, within TX73_019650at 4292.888 kb on - strand, within TX73_019650at 4292.897 kb on + strand, within TX73_019650at 4292.898 kb on + strand, within TX73_019650at 4292.901 kb on - strand, within TX73_019650at 4292.906 kb on - strand, within TX73_019650at 4292.916 kb on + strand, within TX73_019650at 4292.924 kb on - strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.980 kb on + strand, within TX73_019650at 4292.988 kb on - strand, within TX73_019650at 4292.988 kb on - strand, within TX73_019650at 4293.009 kb on - strand, within TX73_019650

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Per-strain Table

Position Strand Gene LocusTag Fraction Sulfoacetic sulfur source
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4,290,695 + TX73_019630 0.51 +0.3
4,290,695 + TX73_019630 0.51 -0.6
4,290,703 - TX73_019630 0.51 -0.2
4,290,710 - TX73_019630 0.52 +0.3
4,290,720 + TX73_019630 0.53 +0.5
4,290,743 + TX73_019630 0.55 -0.2
4,290,786 + TX73_019630 0.59 -0.1
4,290,807 - TX73_019630 0.60 -0.5
4,290,814 - TX73_019630 0.61 -0.3
4,290,814 - TX73_019630 0.61 +0.4
4,290,816 - TX73_019630 0.61 -0.6
4,290,835 + TX73_019630 0.63 +0.3
4,290,848 + TX73_019630 0.64 -0.3
4,290,848 + TX73_019630 0.64 +0.2
4,290,848 + TX73_019630 0.64 +0.1
4,290,856 - TX73_019630 0.65 -0.8
4,290,858 - TX73_019630 0.65 +0.4
4,290,858 - TX73_019630 0.65 +2.3
4,290,860 + TX73_019630 0.65 -1.2
4,290,866 - TX73_019630 0.66 -0.2
4,290,868 - TX73_019630 0.66 -0.4
4,290,868 - TX73_019630 0.66 -0.3
4,290,892 - TX73_019630 0.68 +0.8
4,290,913 - TX73_019630 0.70 +1.4
4,290,913 - TX73_019630 0.70 +0.8
4,290,929 + TX73_019630 0.71 +0.2
4,290,937 - TX73_019630 0.72 -0.7
4,290,945 - TX73_019630 0.73 +0.1
4,290,950 + TX73_019630 0.73 -0.2
4,290,975 - TX73_019630 0.75 +0.1
4,290,982 + TX73_019630 0.76 -0.6
4,290,982 + TX73_019630 0.76 +0.1
4,290,990 - TX73_019630 0.76 +0.1
4,290,995 + TX73_019630 0.77 +0.1
4,290,995 + TX73_019630 0.77 -0.5
4,290,997 + TX73_019630 0.77 +0.0
4,291,068 + TX73_019630 0.83 -0.7
4,291,074 + TX73_019630 0.84 +0.4
4,291,082 - TX73_019630 0.85 +1.0
4,291,094 - TX73_019630 0.86 -0.3
4,291,120 + TX73_019630 0.88 +0.0
4,291,149 - -0.4
4,291,159 - +0.2
4,291,200 + +0.3
4,291,212 - +0.4
4,291,212 - -0.1
4,291,220 - +1.2
4,291,228 - +0.3
4,291,258 + +0.0
4,291,263 + +0.2
4,291,302 + -0.2
4,291,330 - +1.6
4,291,335 - +0.2
4,291,429 + -1.0
4,291,465 - -0.5
4,291,477 + +0.0
4,291,477 + +0.8
4,291,477 + -0.8
4,291,477 + +0.4
4,291,485 - TX73_019635 0.12 -0.1
4,291,529 - TX73_019635 0.37 -1.2
4,291,534 - TX73_019635 0.40 -0.6
4,291,556 - TX73_019635 0.53 -0.5
4,291,570 + TX73_019635 0.60 -0.6
4,291,586 - TX73_019635 0.69 -0.2
4,291,601 + TX73_019635 0.78 -2.0
4,291,625 - -0.6
4,291,686 - TX73_019640 0.10 -0.3
4,291,704 + TX73_019640 0.14 -1.3
4,291,704 - TX73_019640 0.14 +0.4
4,291,750 - TX73_019640 0.26 -0.0
4,291,786 - TX73_019640 0.34 -0.5
4,291,786 - TX73_019640 0.34 -0.9
4,291,786 - TX73_019640 0.34 +0.3
4,291,786 - TX73_019640 0.34 -0.8
4,291,803 - TX73_019640 0.38 -0.3
4,291,833 + TX73_019640 0.46 -0.8
4,291,833 + TX73_019640 0.46 -0.5
4,291,841 - TX73_019640 0.48 +0.6
4,291,854 - TX73_019640 0.51 -0.3
4,291,860 - TX73_019640 0.52 -0.2
4,292,079 - -0.3
4,292,099 + -1.4
4,292,101 + +0.8
4,292,101 + +0.5
4,292,101 + -0.2
4,292,101 + +0.3
4,292,101 + +0.2
4,292,101 + +0.1
4,292,101 + -1.1
4,292,101 + +0.7
4,292,107 - -0.3
4,292,109 - +0.6
4,292,109 - -0.5
4,292,120 + -0.3
4,292,158 - TX73_019645 0.12 -0.5
4,292,188 - TX73_019645 0.21 -1.3
4,292,201 - TX73_019645 0.24 -0.3
4,292,231 + TX73_019645 0.33 -0.8
4,292,232 - TX73_019645 0.33 +0.0
4,292,234 - TX73_019645 0.34 +0.4
4,292,241 + TX73_019645 0.36 +0.4
4,292,297 - TX73_019645 0.52 +0.0
4,292,360 + TX73_019645 0.70 -0.3
4,292,380 - TX73_019645 0.76 -0.9
4,292,420 - TX73_019645 0.88 -0.6
4,292,453 - +0.4
4,292,469 + +0.3
4,292,549 + -1.1
4,292,589 + -0.8
4,292,597 - +0.3
4,292,597 - -0.4
4,292,608 + +0.8
4,292,684 - -0.1
4,292,696 + TX73_019650 0.11 -0.1
4,292,697 + TX73_019650 0.12 -0.1
4,292,704 - TX73_019650 0.12 -0.3
4,292,724 + TX73_019650 0.15 -0.5
4,292,733 - TX73_019650 0.16 +0.0
4,292,739 + TX73_019650 0.17 +0.2
4,292,747 - TX73_019650 0.18 +0.9
4,292,747 - TX73_019650 0.18 +0.3
4,292,750 + TX73_019650 0.19 +0.6
4,292,780 - TX73_019650 0.23 +0.2
4,292,784 - TX73_019650 0.23 -0.3
4,292,829 + TX73_019650 0.29 +0.9
4,292,829 - TX73_019650 0.29 -0.5
4,292,838 - TX73_019650 0.30 -0.3
4,292,869 - TX73_019650 0.34 -0.0
4,292,880 + TX73_019650 0.36 +0.3
4,292,880 + TX73_019650 0.36 -0.1
4,292,888 - TX73_019650 0.37 +0.5
4,292,897 + TX73_019650 0.38 -0.8
4,292,898 + TX73_019650 0.38 +0.2
4,292,901 - TX73_019650 0.39 +0.0
4,292,906 - TX73_019650 0.39 -0.3
4,292,916 + TX73_019650 0.41 +0.1
4,292,924 - TX73_019650 0.42 -0.7
4,292,980 + TX73_019650 0.49 -0.3
4,292,980 + TX73_019650 0.49 -0.5
4,292,980 + TX73_019650 0.49 -0.2
4,292,980 + TX73_019650 0.49 -0.3
4,292,988 - TX73_019650 0.50 +0.6
4,292,988 - TX73_019650 0.50 +0.3
4,293,009 - TX73_019650 0.53 -1.3

Or see this region's nucleotide sequence