Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003215

Experiment: Dimethylsulfoniopropionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003210 and TX73_003215 are separated by 149 nucleotidesTX73_003215 and TX73_003220 are separated by 78 nucleotides TX73_003210: TX73_003210 - DNA recombination protein RmuC, at 687,497 to 688,699 _003210 TX73_003215: TX73_003215 - peptide deformylase, at 688,849 to 689,376 _003215 TX73_003220: TX73_003220 - methionyl-tRNA formyltransferase, at 689,455 to 690,387 _003220 Position (kb) 688 689 690Strain fitness (log2 ratio) -2 -1 0 1at 687.859 kb on + strand, within TX73_003210at 687.863 kb on - strand, within TX73_003210at 687.868 kb on - strand, within TX73_003210at 687.878 kb on - strand, within TX73_003210at 687.902 kb on + strand, within TX73_003210at 687.935 kb on + strand, within TX73_003210at 687.953 kb on - strand, within TX73_003210at 687.962 kb on + strand, within TX73_003210at 687.962 kb on + strand, within TX73_003210at 687.962 kb on + strand, within TX73_003210at 687.962 kb on + strand, within TX73_003210at 687.962 kb on + strand, within TX73_003210at 687.970 kb on - strand, within TX73_003210at 687.970 kb on - strand, within TX73_003210at 687.970 kb on - strand, within TX73_003210at 687.970 kb on - strand, within TX73_003210at 687.980 kb on + strand, within TX73_003210at 687.987 kb on - strand, within TX73_003210at 688.008 kb on + strand, within TX73_003210at 688.021 kb on + strand, within TX73_003210at 688.026 kb on - strand, within TX73_003210at 688.029 kb on - strand, within TX73_003210at 688.045 kb on - strand, within TX73_003210at 688.071 kb on + strand, within TX73_003210at 688.079 kb on - strand, within TX73_003210at 688.152 kb on - strand, within TX73_003210at 688.179 kb on + strand, within TX73_003210at 688.179 kb on + strand, within TX73_003210at 688.179 kb on + strand, within TX73_003210at 688.179 kb on + strand, within TX73_003210at 688.189 kb on - strand, within TX73_003210at 688.208 kb on - strand, within TX73_003210at 688.217 kb on - strand, within TX73_003210at 688.232 kb on - strand, within TX73_003210at 688.233 kb on + strand, within TX73_003210at 688.233 kb on + strand, within TX73_003210at 688.241 kb on - strand, within TX73_003210at 688.272 kb on - strand, within TX73_003210at 688.290 kb on + strand, within TX73_003210at 688.290 kb on + strand, within TX73_003210at 688.309 kb on + strand, within TX73_003210at 688.327 kb on - strand, within TX73_003210at 688.330 kb on - strand, within TX73_003210at 688.341 kb on + strand, within TX73_003210at 688.344 kb on - strand, within TX73_003210at 688.360 kb on - strand, within TX73_003210at 688.369 kb on + strand, within TX73_003210at 688.380 kb on + strand, within TX73_003210at 688.381 kb on - strand, within TX73_003210at 688.382 kb on + strand, within TX73_003210at 688.382 kb on + strand, within TX73_003210at 688.418 kb on + strand, within TX73_003210at 688.420 kb on + strand, within TX73_003210at 688.420 kb on + strand, within TX73_003210at 688.436 kb on - strand, within TX73_003210at 688.438 kb on - strand, within TX73_003210at 688.494 kb on + strand, within TX73_003210at 688.517 kb on + strand, within TX73_003210at 688.526 kb on - strand, within TX73_003210at 688.600 kb on - strandat 688.629 kb on - strandat 688.656 kb on + strandat 688.689 kb on + strandat 688.708 kb on + strandat 688.708 kb on + strandat 688.716 kb on - strandat 688.716 kb on - strandat 688.716 kb on - strandat 688.725 kb on + strandat 688.763 kb on + strandat 688.763 kb on + strandat 688.764 kb on - strandat 688.764 kb on - strandat 688.771 kb on - strandat 688.806 kb on + strandat 688.814 kb on - strandat 688.832 kb on - strandat 688.834 kb on + strandat 688.855 kb on - strandat 688.855 kb on - strandat 688.865 kb on - strandat 689.297 kb on - strand, within TX73_003215at 689.304 kb on + strand, within TX73_003215at 689.350 kb on + strandat 689.365 kb on + strandat 689.413 kb on - strandat 689.420 kb on - strandat 689.422 kb on + strandat 689.425 kb on - strandat 689.427 kb on + strandat 689.427 kb on + strandat 689.427 kb on + strandat 689.427 kb on + strandat 689.427 kb on + strandat 689.427 kb on + strandat 689.435 kb on - strandat 689.437 kb on + strandat 689.437 kb on + strandat 689.453 kb on - strandat 689.454 kb on - strandat 690.369 kb on + strandat 690.369 kb on + strandat 690.369 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethylsulfoniopropionate sulfur source
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687,859 + TX73_003210 0.30 -0.6
687,863 - TX73_003210 0.30 -0.4
687,868 - TX73_003210 0.31 -0.4
687,878 - TX73_003210 0.32 -0.8
687,902 + TX73_003210 0.34 -0.7
687,935 + TX73_003210 0.36 +0.2
687,953 - TX73_003210 0.38 -0.1
687,962 + TX73_003210 0.39 -0.6
687,962 + TX73_003210 0.39 +0.4
687,962 + TX73_003210 0.39 +0.3
687,962 + TX73_003210 0.39 -0.3
687,962 + TX73_003210 0.39 +0.8
687,970 - TX73_003210 0.39 -0.6
687,970 - TX73_003210 0.39 -0.2
687,970 - TX73_003210 0.39 -0.1
687,970 - TX73_003210 0.39 +0.3
687,980 + TX73_003210 0.40 +0.5
687,987 - TX73_003210 0.41 -0.4
688,008 + TX73_003210 0.42 -0.0
688,021 + TX73_003210 0.44 -0.6
688,026 - TX73_003210 0.44 -0.1
688,029 - TX73_003210 0.44 -1.0
688,045 - TX73_003210 0.46 +0.4
688,071 + TX73_003210 0.48 +0.8
688,079 - TX73_003210 0.48 +0.4
688,152 - TX73_003210 0.54 -0.9
688,179 + TX73_003210 0.57 +0.8
688,179 + TX73_003210 0.57 -0.9
688,179 + TX73_003210 0.57 -0.1
688,179 + TX73_003210 0.57 -0.3
688,189 - TX73_003210 0.58 -0.7
688,208 - TX73_003210 0.59 -0.2
688,217 - TX73_003210 0.60 -0.9
688,232 - TX73_003210 0.61 +0.2
688,233 + TX73_003210 0.61 +0.7
688,233 + TX73_003210 0.61 -0.5
688,241 - TX73_003210 0.62 -0.1
688,272 - TX73_003210 0.64 +0.4
688,290 + TX73_003210 0.66 +0.6
688,290 + TX73_003210 0.66 -0.9
688,309 + TX73_003210 0.67 -0.2
688,327 - TX73_003210 0.69 -0.5
688,330 - TX73_003210 0.69 -0.1
688,341 + TX73_003210 0.70 -0.0
688,344 - TX73_003210 0.70 +0.4
688,360 - TX73_003210 0.72 -0.4
688,369 + TX73_003210 0.72 +1.2
688,380 + TX73_003210 0.73 -1.7
688,381 - TX73_003210 0.73 +0.9
688,382 + TX73_003210 0.74 +0.3
688,382 + TX73_003210 0.74 -0.0
688,418 + TX73_003210 0.77 +0.0
688,420 + TX73_003210 0.77 +0.1
688,420 + TX73_003210 0.77 +0.5
688,436 - TX73_003210 0.78 -1.6
688,438 - TX73_003210 0.78 -0.5
688,494 + TX73_003210 0.83 +0.7
688,517 + TX73_003210 0.85 +0.0
688,526 - TX73_003210 0.86 -0.4
688,600 - +0.1
688,629 - -0.9
688,656 + +0.3
688,689 + -2.5
688,708 + -1.3
688,708 + -0.1
688,716 - +0.2
688,716 - -0.3
688,716 - -0.9
688,725 + +0.2
688,763 + +0.7
688,763 + +0.0
688,764 - -0.3
688,764 - +0.3
688,771 - +0.1
688,806 + +0.2
688,814 - -0.3
688,832 - -1.1
688,834 + +0.3
688,855 - -1.5
688,855 - -0.1
688,865 - +0.7
689,297 - TX73_003215 0.85 +0.4
689,304 + TX73_003215 0.86 -0.1
689,350 + +0.2
689,365 + -0.6
689,413 - +0.4
689,420 - -0.6
689,422 + -0.1
689,425 - +0.4
689,427 + -0.4
689,427 + +0.8
689,427 + -0.3
689,427 + +0.4
689,427 + +0.9
689,427 + -0.6
689,435 - +0.5
689,437 + -0.0
689,437 + -0.5
689,453 - +0.1
689,454 - -0.2
690,369 + -0.2
690,369 + -0.2
690,369 + +0.1

Or see this region's nucleotide sequence