Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013585

Experiment: Dimethylsulfoniopropionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_013575 and TX73_013580 overlap by 1 nucleotidesTX73_013580 and TX73_013585 are separated by 123 nucleotidesTX73_013585 and TX73_013590 are separated by 552 nucleotides TX73_013575: TX73_013575 - ABC transporter ATP-binding protein, at 2,981,511 to 2,982,290 _013575 TX73_013580: TX73_013580 - ABC transporter permease, at 2,982,290 to 2,983,132 _013580 TX73_013585: TX73_013585 - aliphatic sulfonate ABC transporter substrate-binding protein, at 2,983,256 to 2,984,230 _013585 TX73_013590: TX73_013590 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,984,783 to 2,985,991 _013590 Position (kb) 2983 2984 2985Strain fitness (log2 ratio) -1 0 1 2at 2982.269 kb on - strandat 2982.332 kb on + strandat 2982.338 kb on + strandat 2982.340 kb on - strandat 2982.375 kb on - strand, within TX73_013580at 2982.410 kb on + strand, within TX73_013580at 2982.430 kb on + strand, within TX73_013580at 2982.448 kb on + strand, within TX73_013580at 2982.471 kb on - strand, within TX73_013580at 2982.482 kb on - strand, within TX73_013580at 2982.500 kb on + strand, within TX73_013580at 2982.514 kb on - strand, within TX73_013580at 2982.517 kb on + strand, within TX73_013580at 2982.588 kb on - strand, within TX73_013580at 2982.612 kb on + strand, within TX73_013580at 2982.629 kb on - strand, within TX73_013580at 2982.667 kb on - strand, within TX73_013580at 2982.700 kb on + strand, within TX73_013580at 2982.716 kb on - strand, within TX73_013580at 2982.755 kb on + strand, within TX73_013580at 2982.783 kb on + strand, within TX73_013580at 2982.836 kb on - strand, within TX73_013580at 2982.840 kb on + strand, within TX73_013580at 2982.840 kb on + strand, within TX73_013580at 2982.840 kb on + strand, within TX73_013580at 2982.848 kb on - strand, within TX73_013580at 2982.961 kb on - strand, within TX73_013580at 2983.034 kb on + strand, within TX73_013580at 2983.081 kb on - strandat 2983.081 kb on - strandat 2983.081 kb on - strandat 2983.113 kb on - strandat 2983.132 kb on + strandat 2983.173 kb on + strandat 2983.240 kb on - strandat 2983.268 kb on - strandat 2983.381 kb on + strand, within TX73_013585at 2983.428 kb on - strand, within TX73_013585at 2983.477 kb on + strand, within TX73_013585at 2983.596 kb on - strand, within TX73_013585at 2983.606 kb on - strand, within TX73_013585at 2983.635 kb on - strand, within TX73_013585at 2983.674 kb on - strand, within TX73_013585at 2983.738 kb on - strand, within TX73_013585at 2983.762 kb on + strand, within TX73_013585at 2983.775 kb on - strand, within TX73_013585at 2983.908 kb on + strand, within TX73_013585at 2983.940 kb on - strand, within TX73_013585at 2984.042 kb on - strand, within TX73_013585at 2984.083 kb on - strand, within TX73_013585at 2984.109 kb on + strand, within TX73_013585at 2984.220 kb on - strandat 2984.224 kb on - strandat 2984.424 kb on + strandat 2984.432 kb on - strandat 2984.450 kb on + strandat 2984.473 kb on - strandat 2984.481 kb on - strandat 2984.506 kb on + strandat 2984.507 kb on + strandat 2984.507 kb on + strandat 2984.507 kb on + strandat 2984.507 kb on + strandat 2984.507 kb on + strandat 2984.507 kb on + strandat 2984.510 kb on - strandat 2984.510 kb on - strandat 2984.515 kb on - strandat 2984.515 kb on - strandat 2984.515 kb on - strandat 2984.515 kb on - strandat 2984.515 kb on - strandat 2984.515 kb on - strandat 2984.515 kb on - strandat 2984.565 kb on - strandat 2984.635 kb on + strandat 2984.654 kb on + strandat 2984.717 kb on + strandat 2984.730 kb on + strandat 2984.746 kb on - strandat 2984.750 kb on + strandat 2984.750 kb on + strandat 2984.870 kb on + strandat 2984.909 kb on - strand, within TX73_013590at 2984.937 kb on + strand, within TX73_013590at 2984.945 kb on - strand, within TX73_013590at 2985.014 kb on + strand, within TX73_013590at 2985.040 kb on - strand, within TX73_013590at 2985.048 kb on - strand, within TX73_013590at 2985.137 kb on - strand, within TX73_013590at 2985.143 kb on - strand, within TX73_013590at 2985.166 kb on - strand, within TX73_013590at 2985.177 kb on - strand, within TX73_013590at 2985.193 kb on - strand, within TX73_013590at 2985.210 kb on + strand, within TX73_013590at 2985.227 kb on + strand, within TX73_013590

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethylsulfoniopropionate sulfur source
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2,982,269 - -0.0
2,982,332 + -1.5
2,982,338 + -0.1
2,982,340 - +0.0
2,982,375 - TX73_013580 0.10 +0.9
2,982,410 + TX73_013580 0.14 -0.1
2,982,430 + TX73_013580 0.17 -0.2
2,982,448 + TX73_013580 0.19 -0.3
2,982,471 - TX73_013580 0.21 -0.2
2,982,482 - TX73_013580 0.23 +0.3
2,982,500 + TX73_013580 0.25 +0.8
2,982,514 - TX73_013580 0.27 -0.2
2,982,517 + TX73_013580 0.27 +0.4
2,982,588 - TX73_013580 0.35 +1.3
2,982,612 + TX73_013580 0.38 +0.1
2,982,629 - TX73_013580 0.40 -0.5
2,982,667 - TX73_013580 0.45 +0.6
2,982,700 + TX73_013580 0.49 +0.1
2,982,716 - TX73_013580 0.51 +1.1
2,982,755 + TX73_013580 0.55 -1.3
2,982,783 + TX73_013580 0.58 +0.2
2,982,836 - TX73_013580 0.65 -0.2
2,982,840 + TX73_013580 0.65 +0.1
2,982,840 + TX73_013580 0.65 +0.7
2,982,840 + TX73_013580 0.65 +0.9
2,982,848 - TX73_013580 0.66 +0.1
2,982,961 - TX73_013580 0.80 +0.8
2,983,034 + TX73_013580 0.88 +0.0
2,983,081 - -0.5
2,983,081 - +1.9
2,983,081 - +0.8
2,983,113 - +0.4
2,983,132 + -0.1
2,983,173 + -0.2
2,983,240 - -0.4
2,983,268 - -0.5
2,983,381 + TX73_013585 0.13 +1.4
2,983,428 - TX73_013585 0.18 +0.6
2,983,477 + TX73_013585 0.23 -0.5
2,983,596 - TX73_013585 0.35 -1.2
2,983,606 - TX73_013585 0.36 +0.3
2,983,635 - TX73_013585 0.39 -0.6
2,983,674 - TX73_013585 0.43 +1.1
2,983,738 - TX73_013585 0.49 -0.2
2,983,762 + TX73_013585 0.52 +0.2
2,983,775 - TX73_013585 0.53 -0.2
2,983,908 + TX73_013585 0.67 -0.5
2,983,940 - TX73_013585 0.70 -0.1
2,984,042 - TX73_013585 0.81 +0.7
2,984,083 - TX73_013585 0.85 +0.2
2,984,109 + TX73_013585 0.87 +0.3
2,984,220 - -0.3
2,984,224 - +0.3
2,984,424 + +0.2
2,984,432 - -0.1
2,984,450 + -0.3
2,984,473 - +0.3
2,984,481 - +0.8
2,984,506 + -0.1
2,984,507 + -0.7
2,984,507 + -0.0
2,984,507 + -1.3
2,984,507 + -0.9
2,984,507 + +1.1
2,984,507 + +0.3
2,984,510 - +0.1
2,984,510 - +0.4
2,984,515 - +0.7
2,984,515 - -0.9
2,984,515 - +0.3
2,984,515 - -0.1
2,984,515 - -0.5
2,984,515 - +0.7
2,984,515 - -0.7
2,984,565 - +0.1
2,984,635 + +0.3
2,984,654 + -0.9
2,984,717 + -0.9
2,984,730 + +0.2
2,984,746 - +0.4
2,984,750 + -0.2
2,984,750 + +0.4
2,984,870 + -0.9
2,984,909 - TX73_013590 0.10 -0.1
2,984,937 + TX73_013590 0.13 +0.8
2,984,945 - TX73_013590 0.13 +0.3
2,985,014 + TX73_013590 0.19 -0.0
2,985,040 - TX73_013590 0.21 -0.2
2,985,048 - TX73_013590 0.22 +0.1
2,985,137 - TX73_013590 0.29 +0.1
2,985,143 - TX73_013590 0.30 +1.0
2,985,166 - TX73_013590 0.32 -0.2
2,985,177 - TX73_013590 0.33 +0.2
2,985,193 - TX73_013590 0.34 -0.5
2,985,210 + TX73_013590 0.35 +0.4
2,985,227 + TX73_013590 0.37 -0.4

Or see this region's nucleotide sequence