Experiment: Dimethylsulfoniopropionate sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_004785 and TX73_004790 overlap by 6 nucleotides TX73_004790 and TX73_004795 are separated by 226 nucleotides TX73_004795 and TX73_004800 overlap by 4 nucleotides
TX73_004785: TX73_004785 - DUF2975 domain-containing protein, at 1,028,534 to 1,029,109
_004785
TX73_004790: TX73_004790 - hypothetical protein, at 1,029,104 to 1,029,766
_004790
TX73_004795: TX73_004795 - UbiX family flavin prenyltransferase, at 1,029,993 to 1,030,595
_004795
TX73_004800: TX73_004800 - UbiD family decarboxylase, at 1,030,592 to 1,032,130
_004800
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1028.997 kb on - strand, within TX73_004785 at 1028.997 kb on - strand, within TX73_004785 at 1029.186 kb on - strand, within TX73_004790 at 1029.248 kb on + strand, within TX73_004790 at 1029.248 kb on + strand, within TX73_004790 at 1029.250 kb on + strand, within TX73_004790 at 1029.260 kb on + strand, within TX73_004790 at 1029.268 kb on - strand, within TX73_004790 at 1029.268 kb on - strand, within TX73_004790 at 1029.290 kb on - strand, within TX73_004790 at 1029.299 kb on - strand, within TX73_004790 at 1029.299 kb on - strand, within TX73_004790 at 1029.320 kb on + strand, within TX73_004790 at 1029.333 kb on - strand, within TX73_004790 at 1029.333 kb on - strand, within TX73_004790 at 1029.351 kb on + strand, within TX73_004790 at 1029.351 kb on - strand, within TX73_004790 at 1029.366 kb on + strand, within TX73_004790 at 1029.366 kb on + strand, within TX73_004790 at 1029.372 kb on - strand, within TX73_004790 at 1029.378 kb on + strand, within TX73_004790 at 1029.407 kb on + strand, within TX73_004790 at 1029.425 kb on - strand, within TX73_004790 at 1029.491 kb on - strand, within TX73_004790 at 1029.512 kb on + strand, within TX73_004790 at 1029.520 kb on - strand, within TX73_004790 at 1029.547 kb on - strand, within TX73_004790 at 1029.573 kb on - strand, within TX73_004790 at 1029.591 kb on + strand, within TX73_004790 at 1029.601 kb on - strand, within TX73_004790 at 1029.603 kb on + strand, within TX73_004790 at 1029.611 kb on - strand, within TX73_004790 at 1029.627 kb on - strand, within TX73_004790 at 1029.702 kb on + strand at 1029.702 kb on + strand at 1029.702 kb on + strand at 1029.707 kb on + strand at 1029.710 kb on - strand at 1029.712 kb on + strand at 1029.720 kb on - strand at 1029.720 kb on - strand at 1029.720 kb on - strand at 1029.812 kb on - strand at 1029.821 kb on - strand at 1029.827 kb on - strand at 1029.876 kb on + strand at 1029.924 kb on + strand at 1029.957 kb on + strand at 1029.964 kb on + strand at 1029.972 kb on - strand at 1029.999 kb on - strand at 1030.006 kb on - strand at 1030.611 kb on - strand at 1030.625 kb on - strand at 1030.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethylsulfoniopropionate sulfur source remove 1,028,997 - TX73_004785 0.80 -0.0 1,028,997 - TX73_004785 0.80 +0.1 1,029,186 - TX73_004790 0.12 +0.0 1,029,248 + TX73_004790 0.22 -0.4 1,029,248 + TX73_004790 0.22 +0.6 1,029,250 + TX73_004790 0.22 -0.5 1,029,260 + TX73_004790 0.24 +0.1 1,029,268 - TX73_004790 0.25 -0.2 1,029,268 - TX73_004790 0.25 -0.7 1,029,290 - TX73_004790 0.28 -0.9 1,029,299 - TX73_004790 0.29 -2.4 1,029,299 - TX73_004790 0.29 +0.1 1,029,320 + TX73_004790 0.33 +0.2 1,029,333 - TX73_004790 0.35 -0.2 1,029,333 - TX73_004790 0.35 -0.9 1,029,351 + TX73_004790 0.37 -0.7 1,029,351 - TX73_004790 0.37 -0.3 1,029,366 + TX73_004790 0.40 -0.7 1,029,366 + TX73_004790 0.40 -0.6 1,029,372 - TX73_004790 0.40 +1.8 1,029,378 + TX73_004790 0.41 -0.2 1,029,407 + TX73_004790 0.46 -1.7 1,029,425 - TX73_004790 0.48 -0.2 1,029,491 - TX73_004790 0.58 -0.4 1,029,512 + TX73_004790 0.62 -1.2 1,029,520 - TX73_004790 0.63 -1.1 1,029,547 - TX73_004790 0.67 +0.6 1,029,573 - TX73_004790 0.71 -0.2 1,029,591 + TX73_004790 0.73 -0.4 1,029,601 - TX73_004790 0.75 +0.1 1,029,603 + TX73_004790 0.75 +0.4 1,029,611 - TX73_004790 0.76 -0.6 1,029,627 - TX73_004790 0.79 +0.4 1,029,702 + +0.0 1,029,702 + +0.1 1,029,702 + -0.1 1,029,707 + +0.4 1,029,710 - +0.1 1,029,712 + +0.4 1,029,720 - +0.8 1,029,720 - +0.1 1,029,720 - +0.7 1,029,812 - +0.1 1,029,821 - +0.2 1,029,827 - -0.1 1,029,876 + -1.2 1,029,924 + +0.8 1,029,957 + +0.2 1,029,964 + +0.3 1,029,972 - +0.4 1,029,999 - -0.3 1,030,006 - -1.6 1,030,611 - -0.7 1,030,625 - +0.6 1,030,650 - -0.5
Or see this region's nucleotide sequence