Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004795

Experiment: Dimethylsulfoniopropionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_004785 and TX73_004790 overlap by 6 nucleotidesTX73_004790 and TX73_004795 are separated by 226 nucleotidesTX73_004795 and TX73_004800 overlap by 4 nucleotides TX73_004785: TX73_004785 - DUF2975 domain-containing protein, at 1,028,534 to 1,029,109 _004785 TX73_004790: TX73_004790 - hypothetical protein, at 1,029,104 to 1,029,766 _004790 TX73_004795: TX73_004795 - UbiX family flavin prenyltransferase, at 1,029,993 to 1,030,595 _004795 TX73_004800: TX73_004800 - UbiD family decarboxylase, at 1,030,592 to 1,032,130 _004800 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -2 -1 0 1 2at 1028.997 kb on - strand, within TX73_004785at 1028.997 kb on - strand, within TX73_004785at 1029.186 kb on - strand, within TX73_004790at 1029.248 kb on + strand, within TX73_004790at 1029.248 kb on + strand, within TX73_004790at 1029.250 kb on + strand, within TX73_004790at 1029.260 kb on + strand, within TX73_004790at 1029.268 kb on - strand, within TX73_004790at 1029.268 kb on - strand, within TX73_004790at 1029.290 kb on - strand, within TX73_004790at 1029.299 kb on - strand, within TX73_004790at 1029.299 kb on - strand, within TX73_004790at 1029.320 kb on + strand, within TX73_004790at 1029.333 kb on - strand, within TX73_004790at 1029.333 kb on - strand, within TX73_004790at 1029.351 kb on + strand, within TX73_004790at 1029.351 kb on - strand, within TX73_004790at 1029.366 kb on + strand, within TX73_004790at 1029.366 kb on + strand, within TX73_004790at 1029.372 kb on - strand, within TX73_004790at 1029.378 kb on + strand, within TX73_004790at 1029.407 kb on + strand, within TX73_004790at 1029.425 kb on - strand, within TX73_004790at 1029.491 kb on - strand, within TX73_004790at 1029.512 kb on + strand, within TX73_004790at 1029.520 kb on - strand, within TX73_004790at 1029.547 kb on - strand, within TX73_004790at 1029.573 kb on - strand, within TX73_004790at 1029.591 kb on + strand, within TX73_004790at 1029.601 kb on - strand, within TX73_004790at 1029.603 kb on + strand, within TX73_004790at 1029.611 kb on - strand, within TX73_004790at 1029.627 kb on - strand, within TX73_004790at 1029.702 kb on + strandat 1029.702 kb on + strandat 1029.702 kb on + strandat 1029.707 kb on + strandat 1029.710 kb on - strandat 1029.712 kb on + strandat 1029.720 kb on - strandat 1029.720 kb on - strandat 1029.720 kb on - strandat 1029.812 kb on - strandat 1029.821 kb on - strandat 1029.827 kb on - strandat 1029.876 kb on + strandat 1029.924 kb on + strandat 1029.957 kb on + strandat 1029.964 kb on + strandat 1029.972 kb on - strandat 1029.999 kb on - strandat 1030.006 kb on - strandat 1030.611 kb on - strandat 1030.625 kb on - strandat 1030.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethylsulfoniopropionate sulfur source
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1,028,997 - TX73_004785 0.80 -0.0
1,028,997 - TX73_004785 0.80 +0.1
1,029,186 - TX73_004790 0.12 +0.0
1,029,248 + TX73_004790 0.22 -0.4
1,029,248 + TX73_004790 0.22 +0.6
1,029,250 + TX73_004790 0.22 -0.5
1,029,260 + TX73_004790 0.24 +0.1
1,029,268 - TX73_004790 0.25 -0.2
1,029,268 - TX73_004790 0.25 -0.7
1,029,290 - TX73_004790 0.28 -0.9
1,029,299 - TX73_004790 0.29 -2.4
1,029,299 - TX73_004790 0.29 +0.1
1,029,320 + TX73_004790 0.33 +0.2
1,029,333 - TX73_004790 0.35 -0.2
1,029,333 - TX73_004790 0.35 -0.9
1,029,351 + TX73_004790 0.37 -0.7
1,029,351 - TX73_004790 0.37 -0.3
1,029,366 + TX73_004790 0.40 -0.7
1,029,366 + TX73_004790 0.40 -0.6
1,029,372 - TX73_004790 0.40 +1.8
1,029,378 + TX73_004790 0.41 -0.2
1,029,407 + TX73_004790 0.46 -1.7
1,029,425 - TX73_004790 0.48 -0.2
1,029,491 - TX73_004790 0.58 -0.4
1,029,512 + TX73_004790 0.62 -1.2
1,029,520 - TX73_004790 0.63 -1.1
1,029,547 - TX73_004790 0.67 +0.6
1,029,573 - TX73_004790 0.71 -0.2
1,029,591 + TX73_004790 0.73 -0.4
1,029,601 - TX73_004790 0.75 +0.1
1,029,603 + TX73_004790 0.75 +0.4
1,029,611 - TX73_004790 0.76 -0.6
1,029,627 - TX73_004790 0.79 +0.4
1,029,702 + +0.0
1,029,702 + +0.1
1,029,702 + -0.1
1,029,707 + +0.4
1,029,710 - +0.1
1,029,712 + +0.4
1,029,720 - +0.8
1,029,720 - +0.1
1,029,720 - +0.7
1,029,812 - +0.1
1,029,821 - +0.2
1,029,827 - -0.1
1,029,876 + -1.2
1,029,924 + +0.8
1,029,957 + +0.2
1,029,964 + +0.3
1,029,972 - +0.4
1,029,999 - -0.3
1,030,006 - -1.6
1,030,611 - -0.7
1,030,625 - +0.6
1,030,650 - -0.5

Or see this region's nucleotide sequence