Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001810

Experiment: Dimethylsulfoniopropionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001805 and TX73_001810 are separated by 220 nucleotidesTX73_001810 and TX73_001815 overlap by 4 nucleotidesTX73_001815 and TX73_001820 are separated by 4 nucleotides TX73_001805: TX73_001805 - alpha/beta hydrolase, at 377,650 to 378,501 _001805 TX73_001810: TX73_001810 - DNA (cytosine-5-)-methyltransferase, at 378,722 to 379,894 _001810 TX73_001815: TX73_001815 - very short patch repair endonuclease, at 379,891 to 380,307 _001815 TX73_001820: TX73_001820 - hypothetical protein, at 380,312 to 381,133 _001820 Position (kb) 378 379 380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 377.749 kb on + strand, within TX73_001805at 377.749 kb on + strand, within TX73_001805at 377.759 kb on + strand, within TX73_001805at 377.759 kb on - strand, within TX73_001805at 377.786 kb on + strand, within TX73_001805at 377.794 kb on - strand, within TX73_001805at 377.794 kb on - strand, within TX73_001805at 377.799 kb on - strand, within TX73_001805at 377.810 kb on - strand, within TX73_001805at 377.907 kb on + strand, within TX73_001805at 377.923 kb on + strand, within TX73_001805at 377.931 kb on - strand, within TX73_001805at 377.931 kb on - strand, within TX73_001805at 377.933 kb on + strand, within TX73_001805at 377.939 kb on + strand, within TX73_001805at 377.939 kb on + strand, within TX73_001805at 377.941 kb on - strand, within TX73_001805at 377.953 kb on + strand, within TX73_001805at 377.958 kb on + strand, within TX73_001805at 377.973 kb on + strand, within TX73_001805at 377.973 kb on + strand, within TX73_001805at 377.983 kb on + strand, within TX73_001805at 377.988 kb on - strand, within TX73_001805at 378.007 kb on + strand, within TX73_001805at 378.022 kb on - strand, within TX73_001805at 378.023 kb on + strand, within TX73_001805at 378.028 kb on + strand, within TX73_001805at 378.028 kb on + strand, within TX73_001805at 378.031 kb on - strand, within TX73_001805at 378.036 kb on - strand, within TX73_001805at 378.046 kb on - strand, within TX73_001805at 378.048 kb on + strand, within TX73_001805at 378.075 kb on + strand, within TX73_001805at 378.096 kb on - strand, within TX73_001805at 378.100 kb on + strand, within TX73_001805at 378.103 kb on - strand, within TX73_001805at 378.172 kb on + strand, within TX73_001805at 378.172 kb on + strand, within TX73_001805at 378.180 kb on - strand, within TX73_001805at 378.180 kb on - strand, within TX73_001805at 378.180 kb on - strand, within TX73_001805at 378.196 kb on + strand, within TX73_001805at 378.204 kb on - strand, within TX73_001805at 378.230 kb on + strand, within TX73_001805at 378.274 kb on + strand, within TX73_001805at 378.296 kb on - strand, within TX73_001805at 378.302 kb on + strand, within TX73_001805at 378.320 kb on + strand, within TX73_001805at 378.341 kb on - strand, within TX73_001805at 378.341 kb on - strand, within TX73_001805at 378.341 kb on - strand, within TX73_001805at 378.341 kb on - strand, within TX73_001805at 378.384 kb on - strand, within TX73_001805at 378.386 kb on + strand, within TX73_001805at 378.386 kb on + strand, within TX73_001805at 378.391 kb on + strand, within TX73_001805at 378.394 kb on - strand, within TX73_001805at 378.394 kb on - strand, within TX73_001805at 378.394 kb on - strand, within TX73_001805at 378.399 kb on - strand, within TX73_001805at 378.434 kb on - strandat 378.436 kb on + strandat 378.449 kb on + strandat 378.449 kb on + strandat 378.449 kb on + strandat 378.457 kb on - strandat 378.457 kb on - strandat 378.459 kb on - strandat 378.559 kb on + strandat 378.560 kb on + strandat 378.579 kb on - strandat 378.621 kb on + strandat 378.638 kb on - strandat 378.651 kb on + strandat 378.656 kb on + strandat 378.656 kb on + strandat 378.656 kb on + strandat 378.656 kb on + strandat 378.664 kb on - strandat 378.664 kb on - strandat 378.664 kb on - strandat 378.664 kb on - strandat 378.666 kb on + strandat 378.666 kb on + strandat 378.666 kb on + strandat 378.712 kb on + strandat 379.865 kb on - strandat 379.917 kb on + strandat 379.921 kb on + strandat 379.939 kb on - strand, within TX73_001815at 379.939 kb on - strand, within TX73_001815at 379.941 kb on + strand, within TX73_001815at 379.944 kb on - strand, within TX73_001815at 379.971 kb on - strand, within TX73_001815at 380.105 kb on - strand, within TX73_001815at 380.111 kb on + strand, within TX73_001815at 380.121 kb on - strand, within TX73_001815at 380.127 kb on - strand, within TX73_001815at 380.127 kb on - strand, within TX73_001815at 380.132 kb on + strand, within TX73_001815at 380.140 kb on - strand, within TX73_001815at 380.182 kb on + strand, within TX73_001815at 380.185 kb on - strand, within TX73_001815at 380.190 kb on - strand, within TX73_001815at 380.190 kb on - strand, within TX73_001815at 380.198 kb on + strand, within TX73_001815at 380.219 kb on - strand, within TX73_001815at 380.229 kb on + strand, within TX73_001815at 380.235 kb on - strand, within TX73_001815at 380.236 kb on + strand, within TX73_001815at 380.245 kb on + strand, within TX73_001815at 380.245 kb on + strand, within TX73_001815at 380.245 kb on + strand, within TX73_001815at 380.253 kb on - strand, within TX73_001815at 380.270 kb on + strandat 380.329 kb on - strandat 380.331 kb on - strandat 380.356 kb on + strandat 380.383 kb on + strandat 380.476 kb on + strand, within TX73_001820at 380.482 kb on + strand, within TX73_001820at 380.482 kb on + strand, within TX73_001820at 380.529 kb on + strand, within TX73_001820at 380.552 kb on - strand, within TX73_001820at 380.572 kb on + strand, within TX73_001820at 380.573 kb on + strand, within TX73_001820at 380.598 kb on + strand, within TX73_001820at 380.609 kb on + strand, within TX73_001820at 380.617 kb on - strand, within TX73_001820at 380.671 kb on + strand, within TX73_001820at 380.691 kb on - strand, within TX73_001820at 380.715 kb on - strand, within TX73_001820at 380.736 kb on + strand, within TX73_001820at 380.743 kb on + strand, within TX73_001820at 380.743 kb on + strand, within TX73_001820at 380.744 kb on - strand, within TX73_001820at 380.748 kb on + strand, within TX73_001820at 380.769 kb on + strand, within TX73_001820at 380.795 kb on + strand, within TX73_001820at 380.805 kb on - strand, within TX73_001820

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethylsulfoniopropionate sulfur source
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377,749 + TX73_001805 0.12 +0.1
377,749 + TX73_001805 0.12 +0.2
377,759 + TX73_001805 0.13 -0.4
377,759 - TX73_001805 0.13 +0.7
377,786 + TX73_001805 0.16 -0.6
377,794 - TX73_001805 0.17 +0.9
377,794 - TX73_001805 0.17 +0.6
377,799 - TX73_001805 0.17 +0.5
377,810 - TX73_001805 0.19 +0.7
377,907 + TX73_001805 0.30 +0.9
377,923 + TX73_001805 0.32 -1.7
377,931 - TX73_001805 0.33 +1.1
377,931 - TX73_001805 0.33 -0.4
377,933 + TX73_001805 0.33 +0.4
377,939 + TX73_001805 0.34 -0.6
377,939 + TX73_001805 0.34 -0.2
377,941 - TX73_001805 0.34 -1.9
377,953 + TX73_001805 0.36 -0.1
377,958 + TX73_001805 0.36 -0.3
377,973 + TX73_001805 0.38 -0.6
377,973 + TX73_001805 0.38 -0.1
377,983 + TX73_001805 0.39 -2.6
377,988 - TX73_001805 0.40 +0.8
378,007 + TX73_001805 0.42 +2.0
378,022 - TX73_001805 0.44 +1.6
378,023 + TX73_001805 0.44 -1.2
378,028 + TX73_001805 0.44 -0.4
378,028 + TX73_001805 0.44 -0.0
378,031 - TX73_001805 0.45 -0.5
378,036 - TX73_001805 0.45 +0.2
378,046 - TX73_001805 0.46 +0.6
378,048 + TX73_001805 0.47 +0.2
378,075 + TX73_001805 0.50 -0.1
378,096 - TX73_001805 0.52 -0.4
378,100 + TX73_001805 0.53 +1.1
378,103 - TX73_001805 0.53 -0.8
378,172 + TX73_001805 0.61 +0.4
378,172 + TX73_001805 0.61 +0.5
378,180 - TX73_001805 0.62 +1.2
378,180 - TX73_001805 0.62 -0.1
378,180 - TX73_001805 0.62 -0.2
378,196 + TX73_001805 0.64 +0.2
378,204 - TX73_001805 0.65 +1.8
378,230 + TX73_001805 0.68 -0.1
378,274 + TX73_001805 0.73 +0.6
378,296 - TX73_001805 0.76 +1.7
378,302 + TX73_001805 0.77 -0.5
378,320 + TX73_001805 0.79 +0.9
378,341 - TX73_001805 0.81 +0.6
378,341 - TX73_001805 0.81 +0.3
378,341 - TX73_001805 0.81 +0.3
378,341 - TX73_001805 0.81 -0.1
378,384 - TX73_001805 0.86 +0.6
378,386 + TX73_001805 0.86 -1.9
378,386 + TX73_001805 0.86 +0.7
378,391 + TX73_001805 0.87 +0.2
378,394 - TX73_001805 0.87 -0.6
378,394 - TX73_001805 0.87 -1.0
378,394 - TX73_001805 0.87 -1.5
378,399 - TX73_001805 0.88 -0.2
378,434 - -0.2
378,436 + +0.1
378,449 + -3.2
378,449 + -1.5
378,449 + +0.0
378,457 - -0.7
378,457 - +0.1
378,459 - +0.8
378,559 + -0.3
378,560 + +0.1
378,579 - +1.0
378,621 + +0.8
378,638 - -0.5
378,651 + -0.5
378,656 + -0.7
378,656 + -1.9
378,656 + -0.4
378,656 + +0.3
378,664 - +0.8
378,664 - +0.3
378,664 - -0.2
378,664 - -0.3
378,666 + -1.0
378,666 + +0.2
378,666 + +1.0
378,712 + +0.6
379,865 - -1.8
379,917 + +0.3
379,921 + -0.2
379,939 - TX73_001815 0.12 +1.0
379,939 - TX73_001815 0.12 -0.9
379,941 + TX73_001815 0.12 +1.2
379,944 - TX73_001815 0.13 -0.8
379,971 - TX73_001815 0.19 -1.9
380,105 - TX73_001815 0.51 -0.7
380,111 + TX73_001815 0.53 -1.1
380,121 - TX73_001815 0.55 -1.1
380,127 - TX73_001815 0.57 -0.6
380,127 - TX73_001815 0.57 -0.6
380,132 + TX73_001815 0.58 -0.3
380,140 - TX73_001815 0.60 +0.3
380,182 + TX73_001815 0.70 -0.1
380,185 - TX73_001815 0.71 -0.4
380,190 - TX73_001815 0.72 +0.2
380,190 - TX73_001815 0.72 +3.0
380,198 + TX73_001815 0.74 -0.3
380,219 - TX73_001815 0.79 -0.6
380,229 + TX73_001815 0.81 -0.8
380,235 - TX73_001815 0.82 -2.4
380,236 + TX73_001815 0.83 +0.5
380,245 + TX73_001815 0.85 -0.9
380,245 + TX73_001815 0.85 +0.7
380,245 + TX73_001815 0.85 -0.7
380,253 - TX73_001815 0.87 +0.1
380,270 + -0.2
380,329 - +0.4
380,331 - +1.4
380,356 + -0.2
380,383 + -0.1
380,476 + TX73_001820 0.20 +0.1
380,482 + TX73_001820 0.21 +0.8
380,482 + TX73_001820 0.21 -0.5
380,529 + TX73_001820 0.26 +0.8
380,552 - TX73_001820 0.29 -0.3
380,572 + TX73_001820 0.32 +0.7
380,573 + TX73_001820 0.32 +0.4
380,598 + TX73_001820 0.35 -0.9
380,609 + TX73_001820 0.36 -1.6
380,617 - TX73_001820 0.37 -1.5
380,671 + TX73_001820 0.44 -0.0
380,691 - TX73_001820 0.46 +0.4
380,715 - TX73_001820 0.49 -0.3
380,736 + TX73_001820 0.52 -0.6
380,743 + TX73_001820 0.52 -0.2
380,743 + TX73_001820 0.52 -1.5
380,744 - TX73_001820 0.53 +0.3
380,748 + TX73_001820 0.53 +0.2
380,769 + TX73_001820 0.56 -0.2
380,795 + TX73_001820 0.59 +0.4
380,805 - TX73_001820 0.60 -1.0

Or see this region's nucleotide sequence