Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22840 and ECOLIN_RS22845 are separated by 153 nucleotides ECOLIN_RS22845 and ECOLIN_RS22850 are separated by 7 nucleotides ECOLIN_RS22850 and ECOLIN_RS22855 are separated by 60 nucleotides
ECOLIN_RS22840: ECOLIN_RS22840 - acetylornithine deacetylase, at 4,588,170 to 4,589,321
_RS22840
ECOLIN_RS22845: ECOLIN_RS22845 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,589,475 to 4,590,479
_RS22845
ECOLIN_RS22850: ECOLIN_RS22850 - acetylglutamate kinase, at 4,590,487 to 4,591,263
_RS22850
ECOLIN_RS22855: ECOLIN_RS22855 - argininosuccinate lyase, at 4,591,324 to 4,592,697
_RS22855
Position (kb) 4589
4590
4591 Strain fitness (log2 ratio) -2
-1
0
1 at 4588.499 kb on + strand, within ECOLIN_RS22840 at 4588.542 kb on - strand, within ECOLIN_RS22840 at 4588.571 kb on + strand, within ECOLIN_RS22840 at 4588.636 kb on + strand, within ECOLIN_RS22840 at 4588.676 kb on + strand, within ECOLIN_RS22840 at 4588.677 kb on - strand, within ECOLIN_RS22840 at 4588.677 kb on - strand, within ECOLIN_RS22840 at 4588.775 kb on + strand, within ECOLIN_RS22840 at 4588.775 kb on + strand, within ECOLIN_RS22840 at 4589.033 kb on + strand, within ECOLIN_RS22840 at 4589.034 kb on - strand, within ECOLIN_RS22840 at 4589.034 kb on - strand, within ECOLIN_RS22840 at 4589.132 kb on + strand, within ECOLIN_RS22840 at 4589.136 kb on - strand, within ECOLIN_RS22840 at 4589.166 kb on + strand, within ECOLIN_RS22840 at 4589.217 kb on + strand at 4589.287 kb on + strand at 4589.398 kb on + strand at 4589.399 kb on - strand at 4589.455 kb on + strand at 4589.455 kb on + strand at 4589.455 kb on + strand at 4589.456 kb on - strand at 4589.467 kb on + strand at 4589.524 kb on + strand at 4589.532 kb on + strand at 4589.532 kb on + strand at 4589.536 kb on + strand at 4589.536 kb on + strand at 4589.561 kb on - strand at 4589.606 kb on - strand, within ECOLIN_RS22845 at 4589.894 kb on + strand, within ECOLIN_RS22845 at 4589.897 kb on + strand, within ECOLIN_RS22845 at 4589.898 kb on - strand, within ECOLIN_RS22845 at 4590.401 kb on - strand at 4590.473 kb on + strand at 4590.501 kb on - strand at 4590.704 kb on + strand, within ECOLIN_RS22850 at 4590.705 kb on - strand, within ECOLIN_RS22850 at 4590.712 kb on - strand, within ECOLIN_RS22850 at 4590.741 kb on + strand, within ECOLIN_RS22850 at 4590.785 kb on + strand, within ECOLIN_RS22850 at 4590.883 kb on - strand, within ECOLIN_RS22850 at 4591.063 kb on - strand, within ECOLIN_RS22850 at 4591.063 kb on - strand, within ECOLIN_RS22850 at 4591.063 kb on - strand, within ECOLIN_RS22850 at 4591.063 kb on - strand, within ECOLIN_RS22850 at 4591.113 kb on + strand, within ECOLIN_RS22850 at 4591.256 kb on + strand at 4591.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 4,588,499 + ECOLIN_RS22840 0.29 -0.4 4,588,542 - ECOLIN_RS22840 0.32 -0.5 4,588,571 + ECOLIN_RS22840 0.35 -0.3 4,588,636 + ECOLIN_RS22840 0.40 +0.2 4,588,676 + ECOLIN_RS22840 0.44 -0.4 4,588,677 - ECOLIN_RS22840 0.44 -0.4 4,588,677 - ECOLIN_RS22840 0.44 -0.3 4,588,775 + ECOLIN_RS22840 0.53 +0.3 4,588,775 + ECOLIN_RS22840 0.53 +0.2 4,589,033 + ECOLIN_RS22840 0.75 +0.1 4,589,034 - ECOLIN_RS22840 0.75 -0.4 4,589,034 - ECOLIN_RS22840 0.75 -0.5 4,589,132 + ECOLIN_RS22840 0.84 +0.1 4,589,136 - ECOLIN_RS22840 0.84 -0.0 4,589,166 + ECOLIN_RS22840 0.86 -0.5 4,589,217 + -2.1 4,589,287 + +0.2 4,589,398 + +0.2 4,589,399 - -0.3 4,589,455 + +0.4 4,589,455 + -0.3 4,589,455 + -0.1 4,589,456 - -0.1 4,589,467 + -0.1 4,589,524 + +0.1 4,589,532 + -0.3 4,589,532 + -0.3 4,589,536 + -0.6 4,589,536 + -0.1 4,589,561 - -0.1 4,589,606 - ECOLIN_RS22845 0.13 -0.2 4,589,894 + ECOLIN_RS22845 0.42 -0.2 4,589,897 + ECOLIN_RS22845 0.42 +0.2 4,589,898 - ECOLIN_RS22845 0.42 +0.3 4,590,401 - +0.0 4,590,473 + +0.1 4,590,501 - +0.0 4,590,704 + ECOLIN_RS22850 0.28 -0.0 4,590,705 - ECOLIN_RS22850 0.28 +0.1 4,590,712 - ECOLIN_RS22850 0.29 +0.0 4,590,741 + ECOLIN_RS22850 0.33 -0.1 4,590,785 + ECOLIN_RS22850 0.38 +0.0 4,590,883 - ECOLIN_RS22850 0.51 +0.5 4,591,063 - ECOLIN_RS22850 0.74 -0.3 4,591,063 - ECOLIN_RS22850 0.74 -0.2 4,591,063 - ECOLIN_RS22850 0.74 -0.0 4,591,063 - ECOLIN_RS22850 0.74 -0.0 4,591,113 + ECOLIN_RS22850 0.81 +0.0 4,591,256 + +0.1 4,591,423 - +0.0
Or see this region's nucleotide sequence