Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22760 and ECOLIN_RS22765 are separated by 328 nucleotides ECOLIN_RS22765 and ECOLIN_RS22770 are separated by 93 nucleotides
ECOLIN_RS22760: ECOLIN_RS22760 - methylenetetrahydrofolate reductase, at 4,567,372 to 4,568,262
_RS22760
ECOLIN_RS22765: ECOLIN_RS22765 - catalase/peroxidase HPI, at 4,568,591 to 4,570,771
_RS22765
ECOLIN_RS22770: ECOLIN_RS22770 - cystine transporter YijE, at 4,570,865 to 4,571,770
_RS22770
Position (kb) 4568
4569
4570
4571 Strain fitness (log2 ratio) -1
0
1 at 4567.593 kb on + strand, within ECOLIN_RS22760 at 4567.593 kb on + strand, within ECOLIN_RS22760 at 4567.750 kb on - strand, within ECOLIN_RS22760 at 4567.762 kb on + strand, within ECOLIN_RS22760 at 4567.763 kb on - strand, within ECOLIN_RS22760 at 4567.763 kb on - strand, within ECOLIN_RS22760 at 4567.835 kb on + strand, within ECOLIN_RS22760 at 4567.835 kb on + strand, within ECOLIN_RS22760 at 4567.836 kb on - strand, within ECOLIN_RS22760 at 4567.868 kb on + strand, within ECOLIN_RS22760 at 4568.061 kb on + strand, within ECOLIN_RS22760 at 4568.136 kb on + strand, within ECOLIN_RS22760 at 4568.195 kb on - strand at 4568.235 kb on + strand at 4568.235 kb on + strand at 4568.265 kb on - strand at 4568.265 kb on - strand at 4568.379 kb on - strand at 4568.379 kb on - strand at 4568.379 kb on - strand at 4568.379 kb on - strand at 4568.379 kb on - strand at 4568.410 kb on + strand at 4568.523 kb on + strand at 4568.566 kb on + strand at 4568.566 kb on + strand at 4568.750 kb on - strand at 4568.801 kb on + strand at 4570.331 kb on - strand, within ECOLIN_RS22765 at 4570.334 kb on + strand, within ECOLIN_RS22765 at 4570.335 kb on - strand, within ECOLIN_RS22765 at 4570.381 kb on + strand, within ECOLIN_RS22765 at 4570.679 kb on + strand at 4570.830 kb on + strand at 4570.830 kb on + strand at 4570.831 kb on - strand at 4570.924 kb on + strand at 4570.924 kb on + strand at 4570.924 kb on + strand at 4570.934 kb on + strand at 4570.936 kb on + strand at 4570.937 kb on - strand at 4570.968 kb on - strand, within ECOLIN_RS22770 at 4571.072 kb on - strand, within ECOLIN_RS22770 at 4571.075 kb on + strand, within ECOLIN_RS22770 at 4571.075 kb on + strand, within ECOLIN_RS22770 at 4571.175 kb on - strand, within ECOLIN_RS22770 at 4571.175 kb on - strand, within ECOLIN_RS22770 at 4571.177 kb on - strand, within ECOLIN_RS22770 at 4571.177 kb on - strand, within ECOLIN_RS22770 at 4571.243 kb on + strand, within ECOLIN_RS22770 at 4571.412 kb on + strand, within ECOLIN_RS22770 at 4571.412 kb on + strand, within ECOLIN_RS22770
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 4,567,593 + ECOLIN_RS22760 0.25 +0.3 4,567,593 + ECOLIN_RS22760 0.25 -0.4 4,567,750 - ECOLIN_RS22760 0.42 -0.6 4,567,762 + ECOLIN_RS22760 0.44 +0.1 4,567,763 - ECOLIN_RS22760 0.44 +0.3 4,567,763 - ECOLIN_RS22760 0.44 -0.3 4,567,835 + ECOLIN_RS22760 0.52 -0.3 4,567,835 + ECOLIN_RS22760 0.52 -0.1 4,567,836 - ECOLIN_RS22760 0.52 -0.5 4,567,868 + ECOLIN_RS22760 0.56 +0.0 4,568,061 + ECOLIN_RS22760 0.77 -0.2 4,568,136 + ECOLIN_RS22760 0.86 +0.1 4,568,195 - -0.0 4,568,235 + +0.0 4,568,235 + -0.0 4,568,265 - -0.1 4,568,265 - +0.2 4,568,379 - -0.6 4,568,379 - -0.2 4,568,379 - -0.4 4,568,379 - +0.5 4,568,379 - -0.2 4,568,410 + +0.3 4,568,523 + +0.4 4,568,566 + -0.1 4,568,566 + +0.0 4,568,750 - -0.1 4,568,801 + +0.5 4,570,331 - ECOLIN_RS22765 0.80 +1.0 4,570,334 + ECOLIN_RS22765 0.80 -0.0 4,570,335 - ECOLIN_RS22765 0.80 +1.1 4,570,381 + ECOLIN_RS22765 0.82 -0.1 4,570,679 + -0.2 4,570,830 + -0.1 4,570,830 + -0.7 4,570,831 - -0.5 4,570,924 + -0.2 4,570,924 + -0.6 4,570,924 + -0.6 4,570,934 + -0.6 4,570,936 + +0.3 4,570,937 - -1.5 4,570,968 - ECOLIN_RS22770 0.11 +0.0 4,571,072 - ECOLIN_RS22770 0.23 -0.0 4,571,075 + ECOLIN_RS22770 0.23 -0.6 4,571,075 + ECOLIN_RS22770 0.23 +0.6 4,571,175 - ECOLIN_RS22770 0.34 +0.1 4,571,175 - ECOLIN_RS22770 0.34 -0.2 4,571,177 - ECOLIN_RS22770 0.34 -0.1 4,571,177 - ECOLIN_RS22770 0.34 -0.4 4,571,243 + ECOLIN_RS22770 0.42 +0.1 4,571,412 + ECOLIN_RS22770 0.60 +0.0 4,571,412 + ECOLIN_RS22770 0.60 +0.2
Or see this region's nucleotide sequence