Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20735 and ECOLIN_RS20740 overlap by 23 nucleotides ECOLIN_RS20740 and ECOLIN_RS20745 are separated by 106 nucleotides ECOLIN_RS20745 and ECOLIN_RS20750 are separated by 36 nucleotides
ECOLIN_RS20735: ECOLIN_RS20735 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 4,177,062 to 4,178,282
_RS20735
ECOLIN_RS20740: ECOLIN_RS20740 - dUTP diphosphatase, at 4,178,260 to 4,178,718
_RS20740
ECOLIN_RS20745: ECOLIN_RS20745 - nucleoid occlusion factor SlmA, at 4,178,825 to 4,179,421
_RS20745
ECOLIN_RS20750: ECOLIN_RS20750 - orotate phosphoribosyltransferase, at 4,179,458 to 4,180,099
_RS20750
Position (kb) 4178
4179 Strain fitness (log2 ratio) -1
0
1 at 4178.723 kb on + strand at 4178.723 kb on + strand at 4178.724 kb on - strand at 4178.724 kb on - strand at 4178.724 kb on - strand at 4178.724 kb on - strand at 4178.743 kb on + strand at 4178.814 kb on + strand at 4178.917 kb on + strand, within ECOLIN_RS20745 at 4179.276 kb on - strand, within ECOLIN_RS20745 at 4179.328 kb on + strand, within ECOLIN_RS20745 at 4179.329 kb on - strand, within ECOLIN_RS20745 at 4179.329 kb on - strand, within ECOLIN_RS20745 at 4179.359 kb on - strand, within ECOLIN_RS20745
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 4,178,723 + -0.0 4,178,723 + -0.2 4,178,724 - +0.2 4,178,724 - -0.2 4,178,724 - -0.3 4,178,724 - +0.0 4,178,743 + -0.4 4,178,814 + +0.0 4,178,917 + ECOLIN_RS20745 0.15 +0.0 4,179,276 - ECOLIN_RS20745 0.76 -0.5 4,179,328 + ECOLIN_RS20745 0.84 -0.4 4,179,329 - ECOLIN_RS20745 0.84 -0.1 4,179,329 - ECOLIN_RS20745 0.84 -0.4 4,179,359 - ECOLIN_RS20745 0.89 +0.3
Or see this region's nucleotide sequence