Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS20570 and ECOLIN_RS20575 overlap by 1 nucleotides ECOLIN_RS20575 and ECOLIN_RS20580 overlap by 4 nucleotides
ECOLIN_RS20570: ECOLIN_RS20570 - L-lactate permease, at 4,145,065 to 4,146,720
_RS20570
ECOLIN_RS20575: ECOLIN_RS20575 - transcriptional regulator LldR, at 4,146,720 to 4,147,496
_RS20575
ECOLIN_RS20580: ECOLIN_RS20580 - quinone-dependent L-lactate dehydrogenase, at 4,147,493 to 4,148,683
_RS20580
Position (kb) 4146
4147
4148 Strain fitness (log2 ratio) -1
0
1 at 4145.780 kb on - strand, within ECOLIN_RS20570 at 4145.820 kb on + strand, within ECOLIN_RS20570 at 4145.821 kb on - strand, within ECOLIN_RS20570 at 4145.821 kb on - strand, within ECOLIN_RS20570 at 4145.922 kb on + strand, within ECOLIN_RS20570 at 4145.923 kb on - strand, within ECOLIN_RS20570 at 4146.143 kb on - strand, within ECOLIN_RS20570 at 4146.288 kb on + strand, within ECOLIN_RS20570 at 4146.288 kb on + strand, within ECOLIN_RS20570 at 4146.288 kb on + strand, within ECOLIN_RS20570 at 4146.292 kb on + strand, within ECOLIN_RS20570 at 4146.293 kb on - strand, within ECOLIN_RS20570 at 4146.444 kb on + strand, within ECOLIN_RS20570 at 4146.453 kb on + strand, within ECOLIN_RS20570 at 4146.454 kb on - strand, within ECOLIN_RS20570 at 4146.701 kb on + strand at 4146.886 kb on + strand, within ECOLIN_RS20575 at 4147.197 kb on + strand, within ECOLIN_RS20575 at 4147.197 kb on - strand, within ECOLIN_RS20575 at 4147.197 kb on - strand, within ECOLIN_RS20575 at 4147.197 kb on - strand, within ECOLIN_RS20575 at 4147.498 kb on + strand at 4147.564 kb on + strand at 4147.565 kb on - strand at 4147.590 kb on - strand at 4147.665 kb on + strand, within ECOLIN_RS20580 at 4147.665 kb on + strand, within ECOLIN_RS20580 at 4147.666 kb on - strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.742 kb on + strand, within ECOLIN_RS20580 at 4147.743 kb on - strand, within ECOLIN_RS20580 at 4147.743 kb on - strand, within ECOLIN_RS20580 at 4147.743 kb on - strand, within ECOLIN_RS20580 at 4147.877 kb on + strand, within ECOLIN_RS20580 at 4148.107 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.150 kb on + strand, within ECOLIN_RS20580 at 4148.331 kb on + strand, within ECOLIN_RS20580 at 4148.341 kb on - strand, within ECOLIN_RS20580 at 4148.419 kb on - strand, within ECOLIN_RS20580 at 4148.443 kb on + strand, within ECOLIN_RS20580 at 4148.443 kb on + strand, within ECOLIN_RS20580
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 4,145,780 - ECOLIN_RS20570 0.43 -0.1 4,145,820 + ECOLIN_RS20570 0.46 +0.1 4,145,821 - ECOLIN_RS20570 0.46 +0.1 4,145,821 - ECOLIN_RS20570 0.46 +0.6 4,145,922 + ECOLIN_RS20570 0.52 -1.1 4,145,923 - ECOLIN_RS20570 0.52 -0.6 4,146,143 - ECOLIN_RS20570 0.65 -0.3 4,146,288 + ECOLIN_RS20570 0.74 -0.3 4,146,288 + ECOLIN_RS20570 0.74 +0.1 4,146,288 + ECOLIN_RS20570 0.74 +0.9 4,146,292 + ECOLIN_RS20570 0.74 -0.4 4,146,293 - ECOLIN_RS20570 0.74 +0.1 4,146,444 + ECOLIN_RS20570 0.83 -0.2 4,146,453 + ECOLIN_RS20570 0.84 +0.2 4,146,454 - ECOLIN_RS20570 0.84 -0.3 4,146,701 + -0.3 4,146,886 + ECOLIN_RS20575 0.21 +0.3 4,147,197 + ECOLIN_RS20575 0.61 +0.1 4,147,197 - ECOLIN_RS20575 0.61 -0.1 4,147,197 - ECOLIN_RS20575 0.61 -0.1 4,147,197 - ECOLIN_RS20575 0.61 +0.1 4,147,498 + +0.1 4,147,564 + +0.2 4,147,565 - +0.4 4,147,590 - -0.1 4,147,665 + ECOLIN_RS20580 0.14 +0.2 4,147,665 + ECOLIN_RS20580 0.14 -0.0 4,147,666 - ECOLIN_RS20580 0.15 +0.2 4,147,742 + ECOLIN_RS20580 0.21 -0.0 4,147,742 + ECOLIN_RS20580 0.21 +0.1 4,147,742 + ECOLIN_RS20580 0.21 -0.1 4,147,742 + ECOLIN_RS20580 0.21 +0.1 4,147,743 - ECOLIN_RS20580 0.21 +0.5 4,147,743 - ECOLIN_RS20580 0.21 -0.2 4,147,743 - ECOLIN_RS20580 0.21 -0.2 4,147,877 + ECOLIN_RS20580 0.32 +0.5 4,148,107 + ECOLIN_RS20580 0.52 +0.2 4,148,150 + ECOLIN_RS20580 0.55 -0.5 4,148,150 + ECOLIN_RS20580 0.55 -1.2 4,148,150 + ECOLIN_RS20580 0.55 +0.2 4,148,150 + ECOLIN_RS20580 0.55 -0.5 4,148,331 + ECOLIN_RS20580 0.70 +0.1 4,148,341 - ECOLIN_RS20580 0.71 -0.1 4,148,419 - ECOLIN_RS20580 0.78 -0.7 4,148,443 + ECOLIN_RS20580 0.80 -0.2 4,148,443 + ECOLIN_RS20580 0.80 +0.5
Or see this region's nucleotide sequence