Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10745

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10740 and ECOLIN_RS10745 are separated by 208 nucleotidesECOLIN_RS10745 and ECOLIN_RS10750 are separated by 10 nucleotidesECOLIN_RS10750 and ECOLIN_RS10755 are separated by 14 nucleotides ECOLIN_RS10740: ECOLIN_RS10740 - flagellar biosynthesis protein FlhB, at 2,092,027 to 2,093,175 _RS10740 ECOLIN_RS10745: ECOLIN_RS10745 - protein phosphatase CheZ, at 2,093,384 to 2,094,028 _RS10745 ECOLIN_RS10750: ECOLIN_RS10750 - chemotaxis response regulator CheY, at 2,094,039 to 2,094,428 _RS10750 ECOLIN_RS10755: ECOLIN_RS10755 - protein-glutamate methylesterase/protein glutamine deamidase, at 2,094,443 to 2,095,492 _RS10755 Position (kb) 2093 2094 2095Strain fitness (log2 ratio) -1 0 1at 2092.969 kb on - strand, within ECOLIN_RS10740at 2092.969 kb on - strand, within ECOLIN_RS10740at 2094.449 kb on - strandat 2094.817 kb on - strand, within ECOLIN_RS10755at 2094.931 kb on + strand, within ECOLIN_RS10755

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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2,092,969 - ECOLIN_RS10740 0.82 +1.1
2,092,969 - ECOLIN_RS10740 0.82 +0.4
2,094,449 - -0.1
2,094,817 - ECOLIN_RS10755 0.36 +1.4
2,094,931 + ECOLIN_RS10755 0.46 -1.0

Or see this region's nucleotide sequence