Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08925

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08915 and ECOLIN_RS08920 are separated by 411 nucleotidesECOLIN_RS08920 and ECOLIN_RS08925 are separated by 92 nucleotidesECOLIN_RS08925 and ECOLIN_RS08930 are separated by 99 nucleotidesECOLIN_RS08930 and ECOLIN_RS08935 are separated by 38 nucleotides ECOLIN_RS08915: ECOLIN_RS08915 - MFS transporter, at 1,758,463 to 1,759,716 _RS08915 ECOLIN_RS08920: ECOLIN_RS08920 - acid resistance repetitive basic protein Asr, at 1,760,128 to 1,760,436 _RS08920 ECOLIN_RS08925: ECOLIN_RS08925 - hypothetical protein, at 1,760,529 to 1,760,612 _RS08925 ECOLIN_RS08930: ECOLIN_RS08930 - serine protease, at 1,760,712 to 1,761,533 _RS08930 ECOLIN_RS08935: ECOLIN_RS08935 - multidrug/spermidine efflux SMR transporter subunit MdtI, at 1,761,572 to 1,761,901 _RS08935 Position (kb) 1760 1761Strain fitness (log2 ratio) -1 0 1at 1759.624 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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1,759,624 + +0.2

Or see this region's nucleotide sequence