Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02575

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02570 and ECOLIN_RS02575 are separated by 148 nucleotidesECOLIN_RS02575 and ECOLIN_RS02580 are separated by 11 nucleotidesECOLIN_RS02580 and ECOLIN_RS02585 overlap by 1 nucleotidesECOLIN_RS02585 and ECOLIN_RS02590 overlap by 11 nucleotides ECOLIN_RS02570: ECOLIN_RS02570 - MFS transporter, at 524,608 to 525,972 _RS02570 ECOLIN_RS02575: ECOLIN_RS02575 - heme o synthase, at 526,121 to 527,011 _RS02575 ECOLIN_RS02580: ECOLIN_RS02580 - cytochrome o ubiquinol oxidase subunit IV, at 527,023 to 527,352 _RS02580 ECOLIN_RS02585: ECOLIN_RS02585 - cytochrome o ubiquinol oxidase subunit III, at 527,352 to 527,966 _RS02585 ECOLIN_RS02590: ECOLIN_RS02590 - cytochrome o ubiquinol oxidase subunit I, at 527,956 to 529,947 _RS02590 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1at 525.165 kb on - strand, within ECOLIN_RS02570at 525.310 kb on - strand, within ECOLIN_RS02570at 525.391 kb on - strand, within ECOLIN_RS02570at 525.395 kb on - strand, within ECOLIN_RS02570at 525.395 kb on - strand, within ECOLIN_RS02570at 525.535 kb on - strand, within ECOLIN_RS02570at 525.661 kb on - strand, within ECOLIN_RS02570at 525.661 kb on - strand, within ECOLIN_RS02570at 525.807 kb on + strand, within ECOLIN_RS02570at 525.808 kb on - strand, within ECOLIN_RS02570at 526.163 kb on - strandat 526.314 kb on + strand, within ECOLIN_RS02575at 526.314 kb on + strand, within ECOLIN_RS02575at 526.375 kb on + strand, within ECOLIN_RS02575at 526.376 kb on - strand, within ECOLIN_RS02575at 526.632 kb on + strand, within ECOLIN_RS02575at 526.632 kb on + strand, within ECOLIN_RS02575at 526.632 kb on + strand, within ECOLIN_RS02575at 526.640 kb on - strand, within ECOLIN_RS02575at 526.640 kb on - strand, within ECOLIN_RS02575at 526.642 kb on - strand, within ECOLIN_RS02575at 526.642 kb on - strand, within ECOLIN_RS02575at 526.653 kb on + strand, within ECOLIN_RS02575at 526.717 kb on + strand, within ECOLIN_RS02575at 526.837 kb on - strand, within ECOLIN_RS02575at 526.837 kb on - strand, within ECOLIN_RS02575at 526.891 kb on - strand, within ECOLIN_RS02575at 526.891 kb on - strand, within ECOLIN_RS02575at 527.042 kb on + strandat 527.043 kb on - strandat 527.059 kb on - strand, within ECOLIN_RS02580at 527.121 kb on + strand, within ECOLIN_RS02580at 527.146 kb on - strand, within ECOLIN_RS02580at 527.301 kb on - strand, within ECOLIN_RS02580at 527.354 kb on - strandat 527.354 kb on - strandat 527.354 kb on - strandat 527.371 kb on + strandat 527.504 kb on + strand, within ECOLIN_RS02585at 527.614 kb on + strand, within ECOLIN_RS02585at 527.695 kb on + strand, within ECOLIN_RS02585at 527.719 kb on + strand, within ECOLIN_RS02585at 527.720 kb on - strand, within ECOLIN_RS02585at 527.827 kb on + strand, within ECOLIN_RS02585at 527.831 kb on + strand, within ECOLIN_RS02585at 527.832 kb on - strand, within ECOLIN_RS02585

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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525,165 - ECOLIN_RS02570 0.41 -0.4
525,310 - ECOLIN_RS02570 0.51 -0.4
525,391 - ECOLIN_RS02570 0.57 -0.6
525,395 - ECOLIN_RS02570 0.58 -0.2
525,395 - ECOLIN_RS02570 0.58 -0.8
525,535 - ECOLIN_RS02570 0.68 -0.7
525,661 - ECOLIN_RS02570 0.77 -0.6
525,661 - ECOLIN_RS02570 0.77 -0.4
525,807 + ECOLIN_RS02570 0.88 +0.8
525,808 - ECOLIN_RS02570 0.88 -2.1
526,163 - -0.6
526,314 + ECOLIN_RS02575 0.22 -0.5
526,314 + ECOLIN_RS02575 0.22 -0.2
526,375 + ECOLIN_RS02575 0.29 -0.8
526,376 - ECOLIN_RS02575 0.29 -0.7
526,632 + ECOLIN_RS02575 0.57 -1.3
526,632 + ECOLIN_RS02575 0.57 -0.6
526,632 + ECOLIN_RS02575 0.57 -0.6
526,640 - ECOLIN_RS02575 0.58 -0.9
526,640 - ECOLIN_RS02575 0.58 -1.0
526,642 - ECOLIN_RS02575 0.58 -0.8
526,642 - ECOLIN_RS02575 0.58 -0.8
526,653 + ECOLIN_RS02575 0.60 -0.8
526,717 + ECOLIN_RS02575 0.67 -0.4
526,837 - ECOLIN_RS02575 0.80 -0.2
526,837 - ECOLIN_RS02575 0.80 -0.3
526,891 - ECOLIN_RS02575 0.86 -0.8
526,891 - ECOLIN_RS02575 0.86 -1.0
527,042 + +0.6
527,043 - -1.3
527,059 - ECOLIN_RS02580 0.11 -0.7
527,121 + ECOLIN_RS02580 0.30 -1.3
527,146 - ECOLIN_RS02580 0.37 -1.1
527,301 - ECOLIN_RS02580 0.84 -0.9
527,354 - -0.6
527,354 - -0.9
527,354 - -1.0
527,371 + -0.3
527,504 + ECOLIN_RS02585 0.25 -2.3
527,614 + ECOLIN_RS02585 0.43 -1.3
527,695 + ECOLIN_RS02585 0.56 -1.1
527,719 + ECOLIN_RS02585 0.60 -1.5
527,720 - ECOLIN_RS02585 0.60 -1.2
527,827 + ECOLIN_RS02585 0.77 -0.1
527,831 + ECOLIN_RS02585 0.78 -1.3
527,832 - ECOLIN_RS02585 0.78 -1.6

Or see this region's nucleotide sequence