Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02535

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS02530 and ECOLIN_RS02535 are separated by 54 nucleotidesECOLIN_RS02535 and ECOLIN_RS02540 are separated by 24 nucleotidesECOLIN_RS02540 and ECOLIN_RS02545 overlap by 1 nucleotides ECOLIN_RS02530: ECOLIN_RS02530 - 1-deoxyxylulose-5-phosphate synthase YajO, at 516,592 to 517,566 _RS02530 ECOLIN_RS02535: ECOLIN_RS02535 - 1-deoxy-D-xylulose-5-phosphate synthase, at 517,621 to 519,483 _RS02535 ECOLIN_RS02540: ECOLIN_RS02540 - (2E,6E)-farnesyl diphosphate synthase, at 519,508 to 520,407 _RS02540 ECOLIN_RS02545: ECOLIN_RS02545 - exodeoxyribonuclease VII small subunit, at 520,407 to 520,649 _RS02545 Position (kb) 517 518 519 520Strain fitness (log2 ratio) -1 0 1at 517.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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517,611 - +0.5

Or see this region's nucleotide sequence