Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS22100

Experiment: Bas38

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS22090 and ECOLIN_RS22095 are separated by 24 nucleotidesECOLIN_RS22095 and ECOLIN_RS22100 overlap by 11 nucleotidesECOLIN_RS22100 and ECOLIN_RS22105 are separated by 23 nucleotides ECOLIN_RS22090: ECOLIN_RS22090 - tripartite tricarboxylate transporter substrate binding protein, at 4,437,521 to 4,438,495 _RS22090 ECOLIN_RS22095: ECOLIN_RS22095 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,438,520 to 4,439,149 _RS22095 ECOLIN_RS22100: ECOLIN_RS22100 - 2-dehydro-3-deoxygalactonokinase, at 4,439,139 to 4,440,143 _RS22100 ECOLIN_RS22105: ECOLIN_RS22105 - IclR family transcriptional regulator, at 4,440,167 to 4,440,934 _RS22105 Position (kb) 4439 4440 4441Strain fitness (log2 ratio) -1 0 1at 4438.142 kb on - strand, within ECOLIN_RS22090at 4438.157 kb on - strand, within ECOLIN_RS22090at 4438.157 kb on - strand, within ECOLIN_RS22090at 4438.279 kb on + strand, within ECOLIN_RS22090at 4438.279 kb on + strand, within ECOLIN_RS22090at 4438.304 kb on + strand, within ECOLIN_RS22090at 4438.304 kb on + strand, within ECOLIN_RS22090at 4438.379 kb on + strand, within ECOLIN_RS22090at 4438.416 kb on - strandat 4438.452 kb on - strandat 4438.480 kb on + strandat 4438.480 kb on + strandat 4438.480 kb on + strandat 4438.605 kb on - strand, within ECOLIN_RS22095at 4438.742 kb on - strand, within ECOLIN_RS22095at 4438.774 kb on + strand, within ECOLIN_RS22095at 4438.833 kb on + strand, within ECOLIN_RS22095at 4438.833 kb on + strand, within ECOLIN_RS22095at 4438.834 kb on - strand, within ECOLIN_RS22095at 4438.837 kb on + strand, within ECOLIN_RS22095at 4438.892 kb on - strand, within ECOLIN_RS22095at 4438.990 kb on + strand, within ECOLIN_RS22095at 4438.990 kb on + strand, within ECOLIN_RS22095at 4438.990 kb on + strand, within ECOLIN_RS22095at 4438.997 kb on - strand, within ECOLIN_RS22095at 4438.997 kb on - strand, within ECOLIN_RS22095at 4439.023 kb on + strand, within ECOLIN_RS22095at 4439.137 kb on + strandat 4439.138 kb on - strandat 4439.138 kb on - strandat 4439.141 kb on - strandat 4439.153 kb on + strandat 4439.154 kb on - strandat 4439.154 kb on - strandat 4439.154 kb on - strandat 4439.205 kb on + strandat 4439.239 kb on - strandat 4439.239 kb on - strandat 4439.239 kb on - strandat 4439.364 kb on + strand, within ECOLIN_RS22100at 4439.364 kb on + strand, within ECOLIN_RS22100at 4439.364 kb on + strand, within ECOLIN_RS22100at 4439.365 kb on - strand, within ECOLIN_RS22100at 4439.365 kb on - strand, within ECOLIN_RS22100at 4439.395 kb on + strand, within ECOLIN_RS22100at 4439.417 kb on + strand, within ECOLIN_RS22100at 4439.467 kb on - strand, within ECOLIN_RS22100at 4439.467 kb on - strand, within ECOLIN_RS22100at 4439.587 kb on - strand, within ECOLIN_RS22100at 4439.726 kb on + strand, within ECOLIN_RS22100at 4439.802 kb on - strand, within ECOLIN_RS22100at 4439.877 kb on + strand, within ECOLIN_RS22100at 4439.881 kb on + strand, within ECOLIN_RS22100at 4439.881 kb on + strand, within ECOLIN_RS22100at 4439.881 kb on + strand, within ECOLIN_RS22100at 4439.881 kb on + strand, within ECOLIN_RS22100at 4439.881 kb on + strand, within ECOLIN_RS22100at 4439.882 kb on - strand, within ECOLIN_RS22100at 4439.882 kb on - strand, within ECOLIN_RS22100at 4439.973 kb on + strand, within ECOLIN_RS22100at 4440.122 kb on + strandat 4440.123 kb on - strandat 4440.237 kb on + strandat 4440.237 kb on + strandat 4440.238 kb on - strandat 4440.271 kb on + strand, within ECOLIN_RS22105at 4440.271 kb on + strand, within ECOLIN_RS22105at 4440.271 kb on + strand, within ECOLIN_RS22105at 4440.271 kb on + strand, within ECOLIN_RS22105at 4440.272 kb on - strand, within ECOLIN_RS22105at 4440.272 kb on - strand, within ECOLIN_RS22105at 4440.273 kb on + strand, within ECOLIN_RS22105at 4440.273 kb on + strand, within ECOLIN_RS22105at 4440.273 kb on + strand, within ECOLIN_RS22105at 4440.273 kb on + strand, within ECOLIN_RS22105at 4440.273 kb on + strand, within ECOLIN_RS22105at 4440.273 kb on + strand, within ECOLIN_RS22105at 4440.273 kb on + strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.274 kb on - strand, within ECOLIN_RS22105at 4440.454 kb on + strand, within ECOLIN_RS22105at 4440.588 kb on + strand, within ECOLIN_RS22105at 4440.589 kb on - strand, within ECOLIN_RS22105at 4440.766 kb on - strand, within ECOLIN_RS22105at 4440.843 kb on - strand, within ECOLIN_RS22105at 4440.843 kb on - strand, within ECOLIN_RS22105at 4440.871 kb on + strandat 4440.871 kb on + strandat 4440.872 kb on - strandat 4440.890 kb on + strandat 4440.891 kb on - strandat 4440.893 kb on + strandat 4440.934 kb on + strandat 4440.971 kb on + strandat 4440.972 kb on - strandat 4440.972 kb on - strandat 4441.008 kb on - strandat 4441.114 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
remove
4,438,142 - ECOLIN_RS22090 0.64 +0.1
4,438,157 - ECOLIN_RS22090 0.65 -0.1
4,438,157 - ECOLIN_RS22090 0.65 -0.3
4,438,279 + ECOLIN_RS22090 0.78 -0.0
4,438,279 + ECOLIN_RS22090 0.78 +0.2
4,438,304 + ECOLIN_RS22090 0.80 +0.4
4,438,304 + ECOLIN_RS22090 0.80 -0.2
4,438,379 + ECOLIN_RS22090 0.88 +0.4
4,438,416 - -0.0
4,438,452 - +0.3
4,438,480 + +0.2
4,438,480 + -0.5
4,438,480 + -0.1
4,438,605 - ECOLIN_RS22095 0.13 +0.1
4,438,742 - ECOLIN_RS22095 0.35 +0.4
4,438,774 + ECOLIN_RS22095 0.40 +0.3
4,438,833 + ECOLIN_RS22095 0.50 -1.1
4,438,833 + ECOLIN_RS22095 0.50 -0.1
4,438,834 - ECOLIN_RS22095 0.50 +0.2
4,438,837 + ECOLIN_RS22095 0.50 +0.0
4,438,892 - ECOLIN_RS22095 0.59 +0.1
4,438,990 + ECOLIN_RS22095 0.75 -0.0
4,438,990 + ECOLIN_RS22095 0.75 -0.1
4,438,990 + ECOLIN_RS22095 0.75 +0.2
4,438,997 - ECOLIN_RS22095 0.76 +0.1
4,438,997 - ECOLIN_RS22095 0.76 -0.1
4,439,023 + ECOLIN_RS22095 0.80 +1.5
4,439,137 + +0.1
4,439,138 - +0.1
4,439,138 - -0.0
4,439,141 - +0.1
4,439,153 + +0.1
4,439,154 - +0.0
4,439,154 - +0.1
4,439,154 - +0.2
4,439,205 + -0.0
4,439,239 - +0.3
4,439,239 - -0.7
4,439,239 - -0.5
4,439,364 + ECOLIN_RS22100 0.22 +0.2
4,439,364 + ECOLIN_RS22100 0.22 +0.1
4,439,364 + ECOLIN_RS22100 0.22 +0.2
4,439,365 - ECOLIN_RS22100 0.22 -0.5
4,439,365 - ECOLIN_RS22100 0.22 -0.1
4,439,395 + ECOLIN_RS22100 0.25 +0.1
4,439,417 + ECOLIN_RS22100 0.28 +0.2
4,439,467 - ECOLIN_RS22100 0.33 +0.0
4,439,467 - ECOLIN_RS22100 0.33 -0.4
4,439,587 - ECOLIN_RS22100 0.45 -0.3
4,439,726 + ECOLIN_RS22100 0.58 +0.4
4,439,802 - ECOLIN_RS22100 0.66 +0.1
4,439,877 + ECOLIN_RS22100 0.73 -0.0
4,439,881 + ECOLIN_RS22100 0.74 +0.5
4,439,881 + ECOLIN_RS22100 0.74 +0.4
4,439,881 + ECOLIN_RS22100 0.74 +0.2
4,439,881 + ECOLIN_RS22100 0.74 -0.4
4,439,881 + ECOLIN_RS22100 0.74 +0.4
4,439,882 - ECOLIN_RS22100 0.74 -0.2
4,439,882 - ECOLIN_RS22100 0.74 +0.4
4,439,973 + ECOLIN_RS22100 0.83 -0.1
4,440,122 + +0.2
4,440,123 - -0.1
4,440,237 + -0.0
4,440,237 + +0.1
4,440,238 - -0.1
4,440,271 + ECOLIN_RS22105 0.14 -0.1
4,440,271 + ECOLIN_RS22105 0.14 -0.1
4,440,271 + ECOLIN_RS22105 0.14 +0.0
4,440,271 + ECOLIN_RS22105 0.14 -0.4
4,440,272 - ECOLIN_RS22105 0.14 -0.4
4,440,272 - ECOLIN_RS22105 0.14 -0.5
4,440,273 + ECOLIN_RS22105 0.14 -0.0
4,440,273 + ECOLIN_RS22105 0.14 -0.3
4,440,273 + ECOLIN_RS22105 0.14 +0.1
4,440,273 + ECOLIN_RS22105 0.14 +0.2
4,440,273 + ECOLIN_RS22105 0.14 +0.2
4,440,273 + ECOLIN_RS22105 0.14 -0.1
4,440,273 + ECOLIN_RS22105 0.14 +0.4
4,440,274 - ECOLIN_RS22105 0.14 -0.5
4,440,274 - ECOLIN_RS22105 0.14 -0.2
4,440,274 - ECOLIN_RS22105 0.14 +0.6
4,440,274 - ECOLIN_RS22105 0.14 -0.4
4,440,274 - ECOLIN_RS22105 0.14 -0.1
4,440,274 - ECOLIN_RS22105 0.14 -0.1
4,440,274 - ECOLIN_RS22105 0.14 -0.3
4,440,274 - ECOLIN_RS22105 0.14 -0.6
4,440,274 - ECOLIN_RS22105 0.14 -0.2
4,440,454 + ECOLIN_RS22105 0.37 -0.4
4,440,588 + ECOLIN_RS22105 0.55 +0.2
4,440,589 - ECOLIN_RS22105 0.55 -0.4
4,440,766 - ECOLIN_RS22105 0.78 +0.1
4,440,843 - ECOLIN_RS22105 0.88 +0.1
4,440,843 - ECOLIN_RS22105 0.88 -0.1
4,440,871 + +0.1
4,440,871 + +0.2
4,440,872 - -0.1
4,440,890 + +0.4
4,440,891 - -0.2
4,440,893 + +0.3
4,440,934 + +0.1
4,440,971 + -0.0
4,440,972 - -1.1
4,440,972 - -1.1
4,441,008 - -1.0
4,441,114 + -0.4

Or see this region's nucleotide sequence