Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS14050

Experiment: Bas38

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS14040 and ECOLIN_RS14045 overlap by 26 nucleotidesECOLIN_RS14045 and ECOLIN_RS14050 are separated by 12 nucleotidesECOLIN_RS14050 and ECOLIN_RS14055 are separated by 292 nucleotides ECOLIN_RS14040: ECOLIN_RS14040 - ethanolamine utilization acetate kinase EutQ, at 2,817,125 to 2,817,826 _RS14040 ECOLIN_RS14045: ECOLIN_RS14045 - ethanolamine utilization acetate kinase EutP, at 2,817,801 to 2,818,280 _RS14045 ECOLIN_RS14050: ECOLIN_RS14050 - ethanolamine utilization microcompartment protein EutS, at 2,818,293 to 2,818,628 _RS14050 ECOLIN_RS14055: ECOLIN_RS14055 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 2,818,921 to 2,821,200 _RS14055 Position (kb) 2818 2819Strain fitness (log2 ratio) -1 0 1at 2818.073 kb on - strand, within ECOLIN_RS14045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
remove
2,818,073 - ECOLIN_RS14045 0.57 -0.4

Or see this region's nucleotide sequence