Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12260

Experiment: Bas38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12250 and ECOLIN_RS12260 are separated by 499 nucleotidesECOLIN_RS12260 and ECOLIN_RS12265 are separated by 414 nucleotides ECOLIN_RS12250: ECOLIN_RS12250 - tRNA 5-hydroxyuridine modification protein YegQ, at 2,430,600 to 2,431,961 _RS12250 ECOLIN_RS12260: ECOLIN_RS12260 - protein YegR, at 2,432,461 to 2,432,778 _RS12260 ECOLIN_RS12265: ECOLIN_RS12265 - lipid kinase YegS, at 2,433,193 to 2,434,092 _RS12265 Position (kb) 2432 2433Strain fitness (log2 ratio) -1 0 1at 2433.711 kb on + strand, within ECOLIN_RS12265

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas38
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2,433,711 + ECOLIN_RS12265 0.58 -0.7

Or see this region's nucleotide sequence