Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS04330 and ECOLIN_RS04335 are separated by 300 nucleotides ECOLIN_RS04335 and ECOLIN_RS31285 are separated by 234 nucleotides ECOLIN_RS31285 and ECOLIN_RS04340 are separated by 52 nucleotides ECOLIN_RS04340 and ECOLIN_RS04345 are separated by 49 nucleotides
ECOLIN_RS04330: ECOLIN_RS04330 - DNA starvation/stationary phase protection protein Dps, at 875,868 to 876,371
_RS04330
ECOLIN_RS04335: ECOLIN_RS04335 - threonine/homoserine exporter RhtA, at 876,672 to 877,559
_RS04335
ECOLIN_RS31285: ECOLIN_RS31285 - protein YliM, at 877,794 to 877,859
_RS31285
ECOLIN_RS04340: ECOLIN_RS04340 - outer membrane protein OmpX, at 877,912 to 878,427
_RS04340
ECOLIN_RS04345: ECOLIN_RS04345 - phosphoethanolamine transferase, at 878,477 to 880,060
_RS04345
Position (kb) 876
877
878 Strain fitness (log2 ratio) -1
0
1
2 at 875.839 kb on - strand at 875.839 kb on - strand at 876.421 kb on - strand at 876.421 kb on - strand at 876.421 kb on - strand at 876.694 kb on - strand at 877.066 kb on - strand, within ECOLIN_RS04335 at 877.546 kb on - strand at 877.874 kb on - strand at 877.994 kb on + strand, within ECOLIN_RS04340 at 878.068 kb on + strand, within ECOLIN_RS04340 at 878.149 kb on + strand, within ECOLIN_RS04340 at 878.149 kb on + strand, within ECOLIN_RS04340 at 878.272 kb on + strand, within ECOLIN_RS04340
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 875,839 - -0.2 875,839 - +0.0 876,421 - +0.0 876,421 - -0.5 876,421 - -0.0 876,694 - +0.5 877,066 - ECOLIN_RS04335 0.44 -0.1 877,546 - +0.9 877,874 - +2.1 877,994 + ECOLIN_RS04340 0.16 +1.6 878,068 + ECOLIN_RS04340 0.30 +1.5 878,149 + ECOLIN_RS04340 0.46 +1.8 878,149 + ECOLIN_RS04340 0.46 +2.6 878,272 + ECOLIN_RS04340 0.70 +1.5
Or see this region's nucleotide sequence