Experiment: Bas38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS04075 and ECOLIN_RS04080 are separated by 0 nucleotides ECOLIN_RS04080 and ECOLIN_RS04085 are separated by 154 nucleotides
ECOLIN_RS04075: ECOLIN_RS04075 - molybdenum ABC transporter ATP-binding protein ModC, at 823,241 to 824,299
_RS04075
ECOLIN_RS04080: ECOLIN_RS04080 - bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase, at 824,300 to 825,118
_RS04080
ECOLIN_RS04085: ECOLIN_RS04085 - 6-phosphogluconolactonase, at 825,273 to 826,268
_RS04085
Position (kb) 824
825
826 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 823.425 kb on + strand, within ECOLIN_RS04075 at 823.513 kb on + strand, within ECOLIN_RS04075 at 823.790 kb on + strand, within ECOLIN_RS04075 at 824.023 kb on + strand, within ECOLIN_RS04075 at 824.150 kb on + strand, within ECOLIN_RS04075 at 824.150 kb on + strand, within ECOLIN_RS04075 at 824.602 kb on + strand, within ECOLIN_RS04080 at 824.663 kb on - strand, within ECOLIN_RS04080 at 824.778 kb on + strand, within ECOLIN_RS04080 at 824.800 kb on - strand, within ECOLIN_RS04080 at 825.530 kb on + strand, within ECOLIN_RS04085 at 825.573 kb on + strand, within ECOLIN_RS04085 at 825.573 kb on + strand, within ECOLIN_RS04085 at 825.689 kb on + strand, within ECOLIN_RS04085 at 825.971 kb on + strand, within ECOLIN_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction Bas38 remove 823,425 + ECOLIN_RS04075 0.17 +0.1 823,513 + ECOLIN_RS04075 0.26 -0.5 823,790 + ECOLIN_RS04075 0.52 +0.1 824,023 + ECOLIN_RS04075 0.74 -0.9 824,150 + ECOLIN_RS04075 0.86 -0.4 824,150 + ECOLIN_RS04075 0.86 +1.1 824,602 + ECOLIN_RS04080 0.37 +0.2 824,663 - ECOLIN_RS04080 0.44 -0.2 824,778 + ECOLIN_RS04080 0.58 +0.0 824,800 - ECOLIN_RS04080 0.61 -0.5 825,530 + ECOLIN_RS04085 0.26 -4.8 825,573 + ECOLIN_RS04085 0.30 -2.0 825,573 + ECOLIN_RS04085 0.30 -2.8 825,689 + ECOLIN_RS04085 0.42 -4.1 825,971 + ECOLIN_RS04085 0.70 -3.6
Or see this region's nucleotide sequence