Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17495 and ECOLIN_RS17500 overlap by 1 nucleotides ECOLIN_RS17500 and ECOLIN_RS17505 are separated by 24 nucleotides ECOLIN_RS17505 and ECOLIN_RS17510 are separated by 0 nucleotides ECOLIN_RS17510 and ECOLIN_RS17515 are separated by 204 nucleotides
ECOLIN_RS17495: ECOLIN_RS17495 - esterase YqiA, at 3,525,962 to 3,526,543
_RS17495
ECOLIN_RS17500: ECOLIN_RS17500 - 3',5'-cyclic-AMP phosphodiesterase, at 3,526,543 to 3,527,370
_RS17500
ECOLIN_RS17505: ECOLIN_RS17505 - DUF1249 family protein, at 3,527,395 to 3,527,817
_RS17505
ECOLIN_RS17510: ECOLIN_RS17510 - ADP-ribose diphosphatase, at 3,527,818 to 3,528,447
_RS17510
ECOLIN_RS17515: ECOLIN_RS17515 - outer membrane channel protein TolC, at 3,528,652 to 3,530,133
_RS17515
Position (kb) 3527
3528 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 3526.897 kb on - strand, within ECOLIN_RS17500 at 3527.066 kb on + strand, within ECOLIN_RS17500 at 3527.066 kb on + strand, within ECOLIN_RS17500 at 3527.503 kb on - strand, within ECOLIN_RS17505 at 3527.503 kb on - strand, within ECOLIN_RS17505 at 3527.503 kb on - strand, within ECOLIN_RS17505 at 3527.609 kb on + strand, within ECOLIN_RS17505 at 3527.609 kb on + strand, within ECOLIN_RS17505 at 3527.635 kb on + strand, within ECOLIN_RS17505 at 3527.636 kb on - strand, within ECOLIN_RS17505 at 3527.820 kb on - strand at 3527.919 kb on - strand, within ECOLIN_RS17510 at 3527.953 kb on - strand, within ECOLIN_RS17510 at 3528.019 kb on - strand, within ECOLIN_RS17510 at 3528.019 kb on - strand, within ECOLIN_RS17510 at 3528.259 kb on + strand, within ECOLIN_RS17510 at 3528.345 kb on + strand, within ECOLIN_RS17510 at 3528.356 kb on - strand, within ECOLIN_RS17510 at 3528.374 kb on + strand, within ECOLIN_RS17510 at 3528.401 kb on - strand at 3528.441 kb on + strand at 3528.548 kb on + strand at 3528.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 3,526,897 - ECOLIN_RS17500 0.43 +1.3 3,527,066 + ECOLIN_RS17500 0.63 +0.4 3,527,066 + ECOLIN_RS17500 0.63 +0.2 3,527,503 - ECOLIN_RS17505 0.26 +0.2 3,527,503 - ECOLIN_RS17505 0.26 -0.1 3,527,503 - ECOLIN_RS17505 0.26 -8.0 3,527,609 + ECOLIN_RS17505 0.51 +0.3 3,527,609 + ECOLIN_RS17505 0.51 -0.3 3,527,635 + ECOLIN_RS17505 0.57 -0.2 3,527,636 - ECOLIN_RS17505 0.57 +0.3 3,527,820 - +0.6 3,527,919 - ECOLIN_RS17510 0.16 +0.2 3,527,953 - ECOLIN_RS17510 0.21 -0.3 3,528,019 - ECOLIN_RS17510 0.32 -0.2 3,528,019 - ECOLIN_RS17510 0.32 -0.4 3,528,259 + ECOLIN_RS17510 0.70 +0.3 3,528,345 + ECOLIN_RS17510 0.84 +0.2 3,528,356 - ECOLIN_RS17510 0.85 +0.2 3,528,374 + ECOLIN_RS17510 0.88 -0.2 3,528,401 - -0.2 3,528,441 + +0.1 3,528,548 + +0.1 3,528,627 + +0.2
Or see this region's nucleotide sequence