Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10975

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10965 and ECOLIN_RS10970 are separated by 87 nucleotidesECOLIN_RS10970 and ECOLIN_RS10975 are separated by 45 nucleotidesECOLIN_RS10975 and ECOLIN_RS10980 are separated by 319 nucleotides ECOLIN_RS10965: ECOLIN_RS10965 - cystine ABC transporter substrate-binding protein, at 2,127,814 to 2,128,614 _RS10965 ECOLIN_RS10970: ECOLIN_RS10970 - flagella biosynthesis regulatory protein FliZ, at 2,128,702 to 2,129,253 _RS10970 ECOLIN_RS10975: ECOLIN_RS10975 - RNA polymerase sigma factor FliA, at 2,129,299 to 2,130,018 _RS10975 ECOLIN_RS10980: ECOLIN_RS10980 - FliC/FljB family flagellin, at 2,130,338 to 2,132,125 _RS10980 Position (kb) 2129 2130 2131Strain fitness (log2 ratio) -1 0 1at 2129.860 kb on - strand, within ECOLIN_RS10975at 2129.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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2,129,860 - ECOLIN_RS10975 0.78 -0.0
2,129,961 - +0.1

Or see this region's nucleotide sequence