Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS07210

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS07200 and ECOLIN_RS07205 are separated by 99 nucleotidesECOLIN_RS07205 and ECOLIN_RS07210 are separated by 1 nucleotidesECOLIN_RS07210 and ECOLIN_RS07215 are separated by 200 nucleotidesECOLIN_RS07215 and ECOLIN_RS07220 are separated by 49 nucleotides ECOLIN_RS07200: ECOLIN_RS07200 - muramoyltetrapeptide carboxypeptidase, at 1,405,197 to 1,406,111 _RS07200 ECOLIN_RS07205: ECOLIN_RS07205 - membrane-bound lytic murein transglycosylase EmtA, at 1,406,211 to 1,406,822 _RS07205 ECOLIN_RS07210: ECOLIN_RS07210 - flagellar brake protein, at 1,406,824 to 1,407,558 _RS07210 ECOLIN_RS07215: ECOLIN_RS07215 - GlsB/YeaQ/YmgE family stress response membrane protein, at 1,407,759 to 1,408,013 _RS07215 ECOLIN_RS07220: ECOLIN_RS07220 - TonB-dependent receptor, at 1,408,063 to 1,410,033 _RS07220 Position (kb) 1406 1407 1408Strain fitness (log2 ratio) -1 0 1at 1406.094 kb on + strandat 1406.094 kb on + strandat 1406.145 kb on - strandat 1407.142 kb on + strand, within ECOLIN_RS07210

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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1,406,094 + +0.1
1,406,094 + -0.6
1,406,145 - +0.1
1,407,142 + ECOLIN_RS07210 0.43 +0.9

Or see this region's nucleotide sequence