Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS02555

Experiment: Bas37

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS02550 and ECOLIN_RS02555 are separated by 53 nucleotidesECOLIN_RS02555 and ECOLIN_RS02560 overlap by 38 nucleotides ECOLIN_RS02550: ECOLIN_RS02550 - tRNA uracil 4-sulfurtransferase ThiI, at 520,855 to 522,303 _RS02550 ECOLIN_RS02555: ECOLIN_RS02555 - protein deglycase YajL, at 522,357 to 522,947 _RS02555 ECOLIN_RS02560: ECOLIN_RS02560 - 2-dehydropantoate 2-reductase, at 522,910 to 523,821 _RS02560 Position (kb) 522 523Strain fitness (log2 ratio) -2 -1 0 1at 521.358 kb on + strand, within ECOLIN_RS02550at 521.581 kb on - strand, within ECOLIN_RS02550at 521.652 kb on + strand, within ECOLIN_RS02550at 521.652 kb on + strand, within ECOLIN_RS02550at 522.276 kb on + strandat 522.292 kb on + strandat 523.159 kb on - strand, within ECOLIN_RS02560at 523.159 kb on - strand, within ECOLIN_RS02560at 523.201 kb on + strand, within ECOLIN_RS02560at 523.346 kb on - strand, within ECOLIN_RS02560at 523.781 kb on - strandat 523.893 kb on + strandat 523.935 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
remove
521,358 + ECOLIN_RS02550 0.35 -1.2
521,581 - ECOLIN_RS02550 0.50 -0.4
521,652 + ECOLIN_RS02550 0.55 +0.1
521,652 + ECOLIN_RS02550 0.55 +0.8
522,276 + +0.4
522,292 + -0.9
523,159 - ECOLIN_RS02560 0.27 +1.2
523,159 - ECOLIN_RS02560 0.27 -2.3
523,201 + ECOLIN_RS02560 0.32 +0.0
523,346 - ECOLIN_RS02560 0.48 +0.1
523,781 - +0.3
523,893 + +0.6
523,935 + -0.6

Or see this region's nucleotide sequence