Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS19990 and ECOLIN_RS19995 are separated by 71 nucleotides ECOLIN_RS19995 and ECOLIN_RS20000 are separated by 53 nucleotides ECOLIN_RS20000 and ECOLIN_RS20010 are separated by 334 nucleotides
ECOLIN_RS19990: ECOLIN_RS19990 - 23S rRNA (adenine(2030)-N(6))-methyltransferase, at 4,012,676 to 4,013,518
_RS19990
ECOLIN_RS19995: ECOLIN_RS19995 - glutathione-disulfide reductase, at 4,013,590 to 4,014,942
_RS19995
ECOLIN_RS20000: ECOLIN_RS20000 - damage-inducible type I toxin DinQ, at 4,014,996 to 4,015,079
_RS20000
ECOLIN_RS20010: ECOLIN_RS20010 - glutaredoxin-dependent arsenate reductase, at 4,015,414 to 4,015,839
_RS20010
Position (kb) 4013
4014
4015 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4012.657 kb on + strand at 4012.916 kb on + strand, within ECOLIN_RS19990 at 4012.929 kb on + strand, within ECOLIN_RS19990 at 4012.964 kb on + strand, within ECOLIN_RS19990 at 4012.995 kb on + strand, within ECOLIN_RS19990 at 4012.996 kb on - strand, within ECOLIN_RS19990 at 4013.226 kb on - strand, within ECOLIN_RS19990 at 4013.249 kb on + strand, within ECOLIN_RS19990 at 4013.287 kb on + strand, within ECOLIN_RS19990 at 4013.496 kb on + strand at 4013.516 kb on + strand at 4013.517 kb on - strand at 4013.539 kb on + strand at 4013.540 kb on - strand at 4013.543 kb on - strand at 4013.543 kb on - strand at 4013.555 kb on - strand at 4013.584 kb on + strand at 4013.584 kb on + strand at 4013.809 kb on - strand, within ECOLIN_RS19995 at 4014.119 kb on - strand, within ECOLIN_RS19995 at 4014.480 kb on + strand, within ECOLIN_RS19995 at 4014.702 kb on + strand, within ECOLIN_RS19995 at 4014.961 kb on + strand at 4014.961 kb on + strand at 4014.979 kb on + strand at 4015.045 kb on - strand, within ECOLIN_RS20000 at 4015.156 kb on + strand at 4015.167 kb on + strand at 4015.167 kb on + strand at 4015.291 kb on + strand at 4015.292 kb on - strand at 4015.304 kb on - strand at 4015.309 kb on + strand at 4015.309 kb on + strand at 4015.309 kb on + strand at 4015.310 kb on - strand at 4015.310 kb on - strand at 4015.310 kb on - strand at 4015.314 kb on - strand at 4015.314 kb on - strand at 4015.328 kb on - strand at 4015.359 kb on - strand at 4015.359 kb on - strand at 4015.461 kb on + strand, within ECOLIN_RS20010 at 4015.462 kb on - strand, within ECOLIN_RS20010 at 4015.462 kb on - strand, within ECOLIN_RS20010 at 4015.464 kb on + strand, within ECOLIN_RS20010 at 4015.507 kb on - strand, within ECOLIN_RS20010 at 4015.510 kb on + strand, within ECOLIN_RS20010 at 4015.589 kb on + strand, within ECOLIN_RS20010 at 4015.656 kb on - strand, within ECOLIN_RS20010 at 4015.666 kb on - strand, within ECOLIN_RS20010 at 4015.837 kb on + strand at 4015.847 kb on - strand at 4015.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 4,012,657 + +0.4 4,012,916 + ECOLIN_RS19990 0.28 -0.1 4,012,929 + ECOLIN_RS19990 0.30 +0.1 4,012,964 + ECOLIN_RS19990 0.34 -0.2 4,012,995 + ECOLIN_RS19990 0.38 -0.3 4,012,996 - ECOLIN_RS19990 0.38 +0.0 4,013,226 - ECOLIN_RS19990 0.65 +0.3 4,013,249 + ECOLIN_RS19990 0.68 -0.1 4,013,287 + ECOLIN_RS19990 0.72 +0.1 4,013,496 + +0.3 4,013,516 + +0.4 4,013,517 - +0.4 4,013,539 + -0.1 4,013,540 - +0.5 4,013,543 - -0.0 4,013,543 - -0.3 4,013,555 - -0.1 4,013,584 + -0.9 4,013,584 + +0.3 4,013,809 - ECOLIN_RS19995 0.16 -6.1 4,014,119 - ECOLIN_RS19995 0.39 -3.0 4,014,480 + ECOLIN_RS19995 0.66 -3.0 4,014,702 + ECOLIN_RS19995 0.82 -2.4 4,014,961 + +0.0 4,014,961 + +0.3 4,014,979 + +0.0 4,015,045 - ECOLIN_RS20000 0.58 +0.3 4,015,156 + +0.2 4,015,167 + +0.1 4,015,167 + +0.0 4,015,291 + -0.2 4,015,292 - +0.1 4,015,304 - +1.1 4,015,309 + +0.1 4,015,309 + -2.0 4,015,309 + +0.6 4,015,310 - +0.0 4,015,310 - -0.0 4,015,310 - -0.2 4,015,314 - -2.6 4,015,314 - -0.3 4,015,328 - +0.1 4,015,359 - +0.0 4,015,359 - +0.1 4,015,461 + ECOLIN_RS20010 0.11 -0.0 4,015,462 - ECOLIN_RS20010 0.11 -0.1 4,015,462 - ECOLIN_RS20010 0.11 +0.1 4,015,464 + ECOLIN_RS20010 0.12 -0.7 4,015,507 - ECOLIN_RS20010 0.22 +0.3 4,015,510 + ECOLIN_RS20010 0.23 -0.1 4,015,589 + ECOLIN_RS20010 0.41 +0.4 4,015,656 - ECOLIN_RS20010 0.57 +0.3 4,015,666 - ECOLIN_RS20010 0.59 +0.2 4,015,837 + -0.1 4,015,847 - -0.1 4,015,849 - +0.5
Or see this region's nucleotide sequence