Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS17565 and ECOLIN_RS17570 are separated by 86 nucleotides ECOLIN_RS17570 and ECOLIN_RS17575 are separated by 15 nucleotides ECOLIN_RS17575 and ECOLIN_RS17580 overlap by 4 nucleotides
ECOLIN_RS17565: ECOLIN_RS17565 - fimbrial-like protein, at 3,538,324 to 3,538,887
_RS17565
ECOLIN_RS17570: ECOLIN_RS17570 - fimbria/pilus outer membrane usher protein, at 3,538,974 to 3,541,496
_RS17570
ECOLIN_RS17575: ECOLIN_RS17575 - fimbria/pilus periplasmic chaperone, at 3,541,512 to 3,542,252
_RS17575
ECOLIN_RS17580: ECOLIN_RS17580 - pilus protein, at 3,542,249 to 3,543,298
_RS17580
Position (kb) 3538
3539
3540
3541
3542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 3538.605 kb on + strand, within ECOLIN_RS17565 at 3538.623 kb on + strand, within ECOLIN_RS17565 at 3538.780 kb on - strand, within ECOLIN_RS17565 at 3538.804 kb on - strand, within ECOLIN_RS17565 at 3538.880 kb on - strand at 3538.885 kb on + strand at 3538.900 kb on - strand at 3538.903 kb on + strand at 3538.904 kb on - strand at 3539.169 kb on - strand at 3539.625 kb on - strand, within ECOLIN_RS17570 at 3539.682 kb on + strand, within ECOLIN_RS17570 at 3539.760 kb on - strand, within ECOLIN_RS17570 at 3539.894 kb on - strand, within ECOLIN_RS17570 at 3539.928 kb on - strand, within ECOLIN_RS17570 at 3540.098 kb on + strand, within ECOLIN_RS17570 at 3540.169 kb on - strand, within ECOLIN_RS17570 at 3540.207 kb on - strand, within ECOLIN_RS17570 at 3540.620 kb on - strand, within ECOLIN_RS17570 at 3540.620 kb on - strand, within ECOLIN_RS17570 at 3540.679 kb on - strand, within ECOLIN_RS17570 at 3540.724 kb on - strand, within ECOLIN_RS17570 at 3540.749 kb on + strand, within ECOLIN_RS17570 at 3540.752 kb on + strand, within ECOLIN_RS17570 at 3540.835 kb on + strand, within ECOLIN_RS17570 at 3540.876 kb on + strand, within ECOLIN_RS17570 at 3540.962 kb on + strand, within ECOLIN_RS17570 at 3540.998 kb on + strand, within ECOLIN_RS17570 at 3540.998 kb on + strand, within ECOLIN_RS17570 at 3540.998 kb on + strand, within ECOLIN_RS17570 at 3540.998 kb on + strand, within ECOLIN_RS17570 at 3540.998 kb on + strand, within ECOLIN_RS17570 at 3540.998 kb on + strand, within ECOLIN_RS17570 at 3540.999 kb on - strand, within ECOLIN_RS17570 at 3541.002 kb on + strand, within ECOLIN_RS17570 at 3541.065 kb on - strand, within ECOLIN_RS17570 at 3541.103 kb on - strand, within ECOLIN_RS17570 at 3541.196 kb on + strand, within ECOLIN_RS17570 at 3541.197 kb on - strand, within ECOLIN_RS17570 at 3541.298 kb on - strand at 3541.298 kb on - strand at 3541.366 kb on - strand at 3541.366 kb on - strand at 3541.402 kb on + strand at 3541.748 kb on + strand, within ECOLIN_RS17575 at 3541.803 kb on - strand, within ECOLIN_RS17575 at 3541.833 kb on + strand, within ECOLIN_RS17575 at 3541.836 kb on + strand, within ECOLIN_RS17575 at 3541.837 kb on - strand, within ECOLIN_RS17575 at 3542.199 kb on - strand at 3542.225 kb on + strand at 3542.269 kb on - strand at 3542.428 kb on + strand, within ECOLIN_RS17580
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 3,538,605 + ECOLIN_RS17565 0.50 +1.1 3,538,623 + ECOLIN_RS17565 0.53 +0.3 3,538,780 - ECOLIN_RS17565 0.81 +2.0 3,538,804 - ECOLIN_RS17565 0.85 -3.6 3,538,880 - -0.2 3,538,885 + +0.3 3,538,900 - -0.4 3,538,903 + +0.3 3,538,904 - -0.2 3,539,169 - -0.7 3,539,625 - ECOLIN_RS17570 0.26 -0.4 3,539,682 + ECOLIN_RS17570 0.28 +0.2 3,539,760 - ECOLIN_RS17570 0.31 +1.2 3,539,894 - ECOLIN_RS17570 0.36 +5.3 3,539,928 - ECOLIN_RS17570 0.38 -0.2 3,540,098 + ECOLIN_RS17570 0.45 +0.7 3,540,169 - ECOLIN_RS17570 0.47 -0.5 3,540,207 - ECOLIN_RS17570 0.49 -0.2 3,540,620 - ECOLIN_RS17570 0.65 +0.1 3,540,620 - ECOLIN_RS17570 0.65 +0.0 3,540,679 - ECOLIN_RS17570 0.68 +0.8 3,540,724 - ECOLIN_RS17570 0.69 +0.2 3,540,749 + ECOLIN_RS17570 0.70 +0.3 3,540,752 + ECOLIN_RS17570 0.70 +0.4 3,540,835 + ECOLIN_RS17570 0.74 +0.4 3,540,876 + ECOLIN_RS17570 0.75 -0.1 3,540,962 + ECOLIN_RS17570 0.79 +0.7 3,540,998 + ECOLIN_RS17570 0.80 +0.2 3,540,998 + ECOLIN_RS17570 0.80 +0.4 3,540,998 + ECOLIN_RS17570 0.80 -0.5 3,540,998 + ECOLIN_RS17570 0.80 +0.4 3,540,998 + ECOLIN_RS17570 0.80 +0.5 3,540,998 + ECOLIN_RS17570 0.80 -0.0 3,540,999 - ECOLIN_RS17570 0.80 +0.8 3,541,002 + ECOLIN_RS17570 0.80 -1.3 3,541,065 - ECOLIN_RS17570 0.83 -0.8 3,541,103 - ECOLIN_RS17570 0.84 +0.2 3,541,196 + ECOLIN_RS17570 0.88 +0.1 3,541,197 - ECOLIN_RS17570 0.88 +0.8 3,541,298 - -1.7 3,541,298 - +1.1 3,541,366 - -0.1 3,541,366 - -0.4 3,541,402 + -0.4 3,541,748 + ECOLIN_RS17575 0.32 +0.6 3,541,803 - ECOLIN_RS17575 0.39 +0.2 3,541,833 + ECOLIN_RS17575 0.43 -0.4 3,541,836 + ECOLIN_RS17575 0.44 -3.0 3,541,837 - ECOLIN_RS17575 0.44 +0.5 3,542,199 - +0.6 3,542,225 + -0.8 3,542,269 - -1.0 3,542,428 + ECOLIN_RS17580 0.17 +0.1
Or see this region's nucleotide sequence