Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS17515

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS17505 and ECOLIN_RS17510 are separated by 0 nucleotidesECOLIN_RS17510 and ECOLIN_RS17515 are separated by 204 nucleotidesECOLIN_RS17515 and ECOLIN_RS17525 are separated by 147 nucleotidesECOLIN_RS17525 and ECOLIN_RS17530 are separated by 5 nucleotides ECOLIN_RS17505: ECOLIN_RS17505 - DUF1249 family protein, at 3,527,395 to 3,527,817 _RS17505 ECOLIN_RS17510: ECOLIN_RS17510 - ADP-ribose diphosphatase, at 3,527,818 to 3,528,447 _RS17510 ECOLIN_RS17515: ECOLIN_RS17515 - outer membrane channel protein TolC, at 3,528,652 to 3,530,133 _RS17515 ECOLIN_RS17525: ECOLIN_RS17525 - DUF1190 family protein, at 3,530,281 to 3,530,952 _RS17525 ECOLIN_RS17530: ECOLIN_RS17530 - glutathionylspermidine synthase family protein, at 3,530,958 to 3,532,118 _RS17530 Position (kb) 3528 3529 3530 3531Strain fitness (log2 ratio) -1 0 1at 3527.820 kb on - strandat 3527.919 kb on - strand, within ECOLIN_RS17510at 3527.953 kb on - strand, within ECOLIN_RS17510at 3528.019 kb on - strand, within ECOLIN_RS17510at 3528.019 kb on - strand, within ECOLIN_RS17510at 3528.259 kb on + strand, within ECOLIN_RS17510at 3528.345 kb on + strand, within ECOLIN_RS17510at 3528.356 kb on - strand, within ECOLIN_RS17510at 3528.374 kb on + strand, within ECOLIN_RS17510at 3528.401 kb on - strandat 3528.441 kb on + strandat 3528.548 kb on + strandat 3528.627 kb on + strandat 3529.127 kb on + strand, within ECOLIN_RS17515

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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3,527,820 - -0.1
3,527,919 - ECOLIN_RS17510 0.16 -0.0
3,527,953 - ECOLIN_RS17510 0.21 -0.3
3,528,019 - ECOLIN_RS17510 0.32 +0.1
3,528,019 - ECOLIN_RS17510 0.32 -0.5
3,528,259 + ECOLIN_RS17510 0.70 -0.5
3,528,345 + ECOLIN_RS17510 0.84 +0.5
3,528,356 - ECOLIN_RS17510 0.85 +0.3
3,528,374 + ECOLIN_RS17510 0.88 -0.1
3,528,401 - -0.1
3,528,441 + +0.4
3,528,548 + +0.0
3,528,627 + -1.7
3,529,127 + ECOLIN_RS17515 0.32 -0.8

Or see this region's nucleotide sequence