Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13725

Experiment: Bas37

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13720 and ECOLIN_RS13725 are separated by 15 nucleotidesECOLIN_RS13725 and ECOLIN_RS13730 are separated by 21 nucleotidesECOLIN_RS13730 and ECOLIN_RS13735 are separated by 218 nucleotides ECOLIN_RS13720: ECOLIN_RS13720 - aminopeptidase, at 2,759,997 to 2,761,082 _RS13720 ECOLIN_RS13725: ECOLIN_RS13725 - PTS fructose transporter subunit IIC, at 2,761,098 to 2,762,345 _RS13725 ECOLIN_RS13730: ECOLIN_RS13730 - PTS fructose transporter subunit IIB, at 2,762,367 to 2,762,693 _RS13730 ECOLIN_RS13735: ECOLIN_RS13735 - glucokinase, at 2,762,912 to 2,763,877 _RS13735 Position (kb) 2761 2762 2763Strain fitness (log2 ratio) -1 0 1at 2760.137 kb on + strand, within ECOLIN_RS13720at 2761.200 kb on - strandat 2761.215 kb on - strandat 2761.215 kb on - strandat 2761.503 kb on - strand, within ECOLIN_RS13725at 2762.151 kb on - strand, within ECOLIN_RS13725at 2762.196 kb on + strand, within ECOLIN_RS13725at 2762.604 kb on + strand, within ECOLIN_RS13730at 2763.158 kb on - strand, within ECOLIN_RS13735at 2763.226 kb on + strand, within ECOLIN_RS13735at 2763.227 kb on - strand, within ECOLIN_RS13735

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas37
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2,760,137 + ECOLIN_RS13720 0.13 +0.3
2,761,200 - -0.2
2,761,215 - -0.0
2,761,215 - -1.5
2,761,503 - ECOLIN_RS13725 0.32 +0.6
2,762,151 - ECOLIN_RS13725 0.84 +0.3
2,762,196 + ECOLIN_RS13725 0.88 +0.5
2,762,604 + ECOLIN_RS13730 0.72 +0.4
2,763,158 - ECOLIN_RS13735 0.25 -1.0
2,763,226 + ECOLIN_RS13735 0.33 -0.4
2,763,227 - ECOLIN_RS13735 0.33 -0.2

Or see this region's nucleotide sequence