Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS06875 and ECOLIN_RS06880 overlap by 17 nucleotides ECOLIN_RS06880 and ECOLIN_RS06885 overlap by 4 nucleotides ECOLIN_RS06885 and ECOLIN_RS06890 overlap by 11 nucleotides
ECOLIN_RS06875: ECOLIN_RS06875 - phage terminase large subunit family protein, at 1,351,375 to 1,353,303
_RS06875
ECOLIN_RS06880: ECOLIN_RS06880 - phage head-stabilizing protein, at 1,353,287 to 1,353,493
_RS06880
ECOLIN_RS06885: ECOLIN_RS06885 - phage portal protein, at 1,353,490 to 1,355,082
_RS06885
ECOLIN_RS06890: ECOLIN_RS06890 - S49 family peptidase, at 1,355,072 to 1,356,577
_RS06890
Position (kb) 1353
1354
1355
1356 Strain fitness (log2 ratio) -1
0
1 at 1352.602 kb on + strand, within ECOLIN_RS06875 at 1352.603 kb on - strand, within ECOLIN_RS06875 at 1353.154 kb on + strand at 1353.392 kb on - strand, within ECOLIN_RS06880 at 1353.732 kb on + strand, within ECOLIN_RS06885 at 1353.732 kb on + strand, within ECOLIN_RS06885 at 1354.561 kb on + strand, within ECOLIN_RS06885 at 1355.252 kb on + strand, within ECOLIN_RS06890 at 1355.651 kb on + strand, within ECOLIN_RS06890 at 1355.816 kb on + strand, within ECOLIN_RS06890
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 1,352,602 + ECOLIN_RS06875 0.64 -0.0 1,352,603 - ECOLIN_RS06875 0.64 +0.5 1,353,154 + -0.4 1,353,392 - ECOLIN_RS06880 0.51 -0.1 1,353,732 + ECOLIN_RS06885 0.15 +0.1 1,353,732 + ECOLIN_RS06885 0.15 +0.8 1,354,561 + ECOLIN_RS06885 0.67 +0.6 1,355,252 + ECOLIN_RS06890 0.12 -0.3 1,355,651 + ECOLIN_RS06890 0.38 -0.1 1,355,816 + ECOLIN_RS06890 0.49 -1.5
Or see this region's nucleotide sequence