Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS03375 and ECOLIN_RS03380 are separated by 379 nucleotides ECOLIN_RS03380 and ECOLIN_RS03385 overlap by 32 nucleotides ECOLIN_RS03385 and ECOLIN_RS03390 are separated by 40 nucleotides
ECOLIN_RS03375: ECOLIN_RS03375 - [citrate (pro-3S)-lyase] ligase, at 696,605 to 697,663
_RS03375
ECOLIN_RS03380: ECOLIN_RS03380 - sensor histidine kinase DpiB, at 698,043 to 699,701
_RS03380
ECOLIN_RS03385: ECOLIN_RS03385 - two-component response regulator DpiA, at 699,670 to 700,350
_RS03385
ECOLIN_RS03390: ECOLIN_RS03390 - anaerobic C4-dicarboxylate transporter DcuC, at 700,391 to 701,776
_RS03390
Position (kb) 698
699
700 Strain fitness (log2 ratio) -1
0
1
2 at 698.184 kb on + strand at 698.331 kb on + strand, within ECOLIN_RS03380 at 698.993 kb on + strand, within ECOLIN_RS03380 at 699.047 kb on + strand, within ECOLIN_RS03380 at 699.071 kb on + strand, within ECOLIN_RS03380 at 699.071 kb on + strand, within ECOLIN_RS03380 at 699.564 kb on + strand at 699.579 kb on + strand at 699.584 kb on - strand at 700.334 kb on + strand at 700.334 kb on + strand at 700.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 698,184 + +0.2 698,331 + ECOLIN_RS03380 0.17 -0.1 698,993 + ECOLIN_RS03380 0.57 +0.5 699,047 + ECOLIN_RS03380 0.61 +0.1 699,071 + ECOLIN_RS03380 0.62 +1.9 699,071 + ECOLIN_RS03380 0.62 -0.3 699,564 + -0.5 699,579 + +0.1 699,584 - +1.5 700,334 + -0.4 700,334 + +0.6 700,389 - -0.2
Or see this region's nucleotide sequence