Experiment: Bas37
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS00365 and ECOLIN_RS00370 overlap by 25 nucleotides ECOLIN_RS00370 and ECOLIN_RS00375 are separated by 163 nucleotides
ECOLIN_RS00365: ECOLIN_RS00365 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 75,891 to 77,501
_RS00365
ECOLIN_RS00370: ECOLIN_RS00370 - thiamine ABC transporter substrate binding subunit, at 77,477 to 78,460
_RS00370
ECOLIN_RS00375: ECOLIN_RS00375 - DNA-binding transcriptional regulator SgrR, at 78,624 to 80,279
_RS00375
Position (kb) 77
78
79 Strain fitness (log2 ratio) -1
0
1 at 76.643 kb on + strand, within ECOLIN_RS00365 at 76.644 kb on - strand, within ECOLIN_RS00365 at 76.810 kb on + strand, within ECOLIN_RS00365 at 76.896 kb on + strand, within ECOLIN_RS00365 at 76.896 kb on + strand, within ECOLIN_RS00365 at 77.028 kb on + strand, within ECOLIN_RS00365 at 77.769 kb on + strand, within ECOLIN_RS00370 at 77.774 kb on - strand, within ECOLIN_RS00370 at 77.818 kb on - strand, within ECOLIN_RS00370 at 77.978 kb on - strand, within ECOLIN_RS00370 at 78.381 kb on + strand at 78.381 kb on + strand at 78.382 kb on - strand at 78.382 kb on - strand at 78.385 kb on + strand at 78.386 kb on - strand at 78.387 kb on + strand at 78.388 kb on - strand at 78.600 kb on - strand at 78.701 kb on + strand at 78.701 kb on + strand at 78.702 kb on - strand at 78.702 kb on - strand at 78.702 kb on - strand at 78.702 kb on - strand at 78.702 kb on - strand at 78.702 kb on - strand at 79.271 kb on - strand, within ECOLIN_RS00375 at 79.274 kb on - strand, within ECOLIN_RS00375
Per-strain Table
Position Strand Gene LocusTag Fraction Bas37 remove 76,643 + ECOLIN_RS00365 0.47 +1.0 76,644 - ECOLIN_RS00365 0.47 +0.2 76,810 + ECOLIN_RS00365 0.57 +0.0 76,896 + ECOLIN_RS00365 0.62 -0.3 76,896 + ECOLIN_RS00365 0.62 -0.1 77,028 + ECOLIN_RS00365 0.71 +0.6 77,769 + ECOLIN_RS00370 0.30 +0.0 77,774 - ECOLIN_RS00370 0.30 +0.5 77,818 - ECOLIN_RS00370 0.35 +0.7 77,978 - ECOLIN_RS00370 0.51 +0.4 78,381 + +0.3 78,381 + +0.9 78,382 - +0.7 78,382 - +0.6 78,385 + +0.5 78,386 - -0.5 78,387 + +0.5 78,388 - -0.7 78,600 - +0.0 78,701 + -0.7 78,701 + -0.1 78,702 - +0.3 78,702 - -0.0 78,702 - +0.2 78,702 - +0.4 78,702 - -0.1 78,702 - -0.9 79,271 - ECOLIN_RS00375 0.39 +0.6 79,274 - ECOLIN_RS00375 0.39 -0.2
Or see this region's nucleotide sequence