Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23555 and ECOLIN_RS23560 are separated by 44 nucleotides ECOLIN_RS23560 and ECOLIN_RS23565 overlap by 4 nucleotides ECOLIN_RS23565 and ECOLIN_RS23570 overlap by 4 nucleotides ECOLIN_RS23570 and ECOLIN_RS23575 are separated by 19 nucleotides
ECOLIN_RS23555: ECOLIN_RS23555 - ammonia-forming nitrite reductase cytochrome c552 subunit, at 4,748,223 to 4,749,659
_RS23555
ECOLIN_RS23560: ECOLIN_RS23560 - cytochrome c nitrite reductase pentaheme subunit, at 4,749,704 to 4,750,270
_RS23560
ECOLIN_RS23565: ECOLIN_RS23565 - cytochrome c nitrite reductase Fe-S protein, at 4,750,267 to 4,750,938
_RS23565
ECOLIN_RS23570: ECOLIN_RS23570 - cytochrome c nitrite reductase subunit NrfD, at 4,750,935 to 4,751,891
_RS23570
ECOLIN_RS23575: ECOLIN_RS23575 - heme lyase CcmF/NrfE family subunit, at 4,751,911 to 4,753,629
_RS23575
Position (kb) 4750
4751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4749.396 kb on - strand, within ECOLIN_RS23555 at 4749.703 kb on + strand at 4749.714 kb on + strand at 4749.714 kb on + strand at 4749.715 kb on - strand at 4749.723 kb on + strand at 4749.880 kb on + strand, within ECOLIN_RS23560 at 4749.880 kb on + strand, within ECOLIN_RS23560 at 4750.014 kb on - strand, within ECOLIN_RS23560 at 4750.042 kb on + strand, within ECOLIN_RS23560 at 4750.042 kb on + strand, within ECOLIN_RS23560 at 4750.043 kb on - strand, within ECOLIN_RS23560 at 4750.150 kb on + strand, within ECOLIN_RS23560 at 4750.654 kb on + strand, within ECOLIN_RS23565 at 4750.914 kb on + strand at 4750.996 kb on - strand at 4751.084 kb on + strand, within ECOLIN_RS23570 at 4751.085 kb on - strand, within ECOLIN_RS23570 at 4751.085 kb on - strand, within ECOLIN_RS23570 at 4751.085 kb on - strand, within ECOLIN_RS23570 at 4751.204 kb on + strand, within ECOLIN_RS23570 at 4751.205 kb on - strand, within ECOLIN_RS23570 at 4751.205 kb on - strand, within ECOLIN_RS23570 at 4751.205 kb on - strand, within ECOLIN_RS23570 at 4751.244 kb on + strand, within ECOLIN_RS23570 at 4751.245 kb on - strand, within ECOLIN_RS23570 at 4751.245 kb on - strand, within ECOLIN_RS23570 at 4751.418 kb on + strand, within ECOLIN_RS23570 at 4751.419 kb on - strand, within ECOLIN_RS23570 at 4751.584 kb on + strand, within ECOLIN_RS23570 at 4751.585 kb on - strand, within ECOLIN_RS23570 at 4751.585 kb on - strand, within ECOLIN_RS23570 at 4751.889 kb on + strand at 4751.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 4,749,396 - ECOLIN_RS23555 0.82 +0.2 4,749,703 + +0.0 4,749,714 + -0.5 4,749,714 + -1.8 4,749,715 - -0.4 4,749,723 + -0.5 4,749,880 + ECOLIN_RS23560 0.31 -0.4 4,749,880 + ECOLIN_RS23560 0.31 +0.9 4,750,014 - ECOLIN_RS23560 0.55 +0.5 4,750,042 + ECOLIN_RS23560 0.60 +1.8 4,750,042 + ECOLIN_RS23560 0.60 +0.6 4,750,043 - ECOLIN_RS23560 0.60 +0.0 4,750,150 + ECOLIN_RS23560 0.79 +0.1 4,750,654 + ECOLIN_RS23565 0.58 +0.0 4,750,914 + -0.2 4,750,996 - +1.3 4,751,084 + ECOLIN_RS23570 0.16 -0.5 4,751,085 - ECOLIN_RS23570 0.16 -0.4 4,751,085 - ECOLIN_RS23570 0.16 +1.2 4,751,085 - ECOLIN_RS23570 0.16 +0.1 4,751,204 + ECOLIN_RS23570 0.28 +0.0 4,751,205 - ECOLIN_RS23570 0.28 -0.4 4,751,205 - ECOLIN_RS23570 0.28 -0.0 4,751,205 - ECOLIN_RS23570 0.28 -0.5 4,751,244 + ECOLIN_RS23570 0.32 +0.7 4,751,245 - ECOLIN_RS23570 0.32 -0.7 4,751,245 - ECOLIN_RS23570 0.32 +0.2 4,751,418 + ECOLIN_RS23570 0.50 +0.1 4,751,419 - ECOLIN_RS23570 0.51 +0.3 4,751,584 + ECOLIN_RS23570 0.68 +1.1 4,751,585 - ECOLIN_RS23570 0.68 +0.1 4,751,585 - ECOLIN_RS23570 0.68 +0.0 4,751,889 + +0.0 4,751,918 + +0.3
Or see this region's nucleotide sequence