Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23310 and ECOLIN_RS23315 are separated by 178 nucleotides ECOLIN_RS23315 and ECOLIN_RS23320 are separated by 12 nucleotides ECOLIN_RS23320 and ECOLIN_RS23325 are separated by 154 nucleotides
ECOLIN_RS23310: ECOLIN_RS23310 - maltose operon protein MalM, at 4,690,612 to 4,691,532
_RS23310
ECOLIN_RS23315: ECOLIN_RS23315 - chorismate lyase, at 4,691,711 to 4,692,208
_RS23315
ECOLIN_RS23320: ECOLIN_RS23320 - 4-hydroxybenzoate octaprenyltransferase, at 4,692,221 to 4,693,093
_RS23320
ECOLIN_RS23325: ECOLIN_RS23325 - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 4,693,248 to 4,695,671
_RS23325
Position (kb) 4692
4693
4694 Strain fitness (log2 ratio) -1
0
1 at 4691.222 kb on + strand, within ECOLIN_RS23310 at 4691.396 kb on - strand, within ECOLIN_RS23310 at 4691.400 kb on + strand, within ECOLIN_RS23310 at 4691.443 kb on - strand at 4691.530 kb on + strand at 4691.648 kb on - strand at 4691.696 kb on - strand at 4692.105 kb on + strand, within ECOLIN_RS23315 at 4692.171 kb on + strand at 4692.204 kb on - strand at 4692.204 kb on - strand at 4692.206 kb on + strand at 4692.207 kb on - strand at 4693.099 kb on + strand at 4693.182 kb on + strand at 4693.299 kb on - strand at 4693.299 kb on - strand at 4693.299 kb on - strand at 4693.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 4,691,222 + ECOLIN_RS23310 0.66 +0.1 4,691,396 - ECOLIN_RS23310 0.85 +0.4 4,691,400 + ECOLIN_RS23310 0.86 -0.4 4,691,443 - -0.1 4,691,530 + +0.5 4,691,648 - +0.9 4,691,696 - -1.5 4,692,105 + ECOLIN_RS23315 0.79 +0.1 4,692,171 + -0.1 4,692,204 - -1.4 4,692,204 - -0.4 4,692,206 + +0.1 4,692,207 - -0.3 4,693,099 + +0.2 4,693,182 + +0.2 4,693,299 - -1.3 4,693,299 - -1.2 4,693,299 - -0.1 4,693,299 - +0.2
Or see this region's nucleotide sequence