Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS13845

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS13840 and ECOLIN_RS13845 are separated by 89 nucleotidesECOLIN_RS13845 and ECOLIN_RS13850 overlap by 4 nucleotidesECOLIN_RS13850 and ECOLIN_RS13855 are separated by 1 nucleotides ECOLIN_RS13840: ECOLIN_RS13840 - LysR family transcriptional regulator, at 2,778,873 to 2,779,799 _RS13840 ECOLIN_RS13845: ECOLIN_RS13845 - bile acid:sodium symporter family protein, at 2,779,889 to 2,780,887 _RS13845 ECOLIN_RS13850: ECOLIN_RS13850 - DUF3820 family protein, at 2,780,884 to 2,781,102 _RS13850 ECOLIN_RS13855: ECOLIN_RS13855 - NAD-dependent DNA ligase LigA, at 2,781,104 to 2,783,119 _RS13855 Position (kb) 2779 2780 2781Strain fitness (log2 ratio) -1 0 1at 2780.100 kb on + strand, within ECOLIN_RS13845

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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2,780,100 + ECOLIN_RS13845 0.21 +1.0

Or see this region's nucleotide sequence